Alternatives and similar repositories for mrtrix3:

Users that are interested in mrtrix3 are comparing it to the libraries listed below

• nipreps / mriqc
  Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
  ☆306Updated this week
• nipy / heudiconv
  Flexible DICOM conversion into structured directory layouts
  ☆242Updated 2 months ago
• frankyeh / DSI-Studio
  A Tractography Tool for Diffusion MRI
  ☆127Updated this week
• xiangruili / dicm2nii
  DICOM to NIfTI conversion, NIfTI tools
  ☆93Updated 4 months ago
• afni / afni
  Official AFNI source and documentation
  ☆165Updated this week
• nipreps / smriprep
  Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
  ☆135Updated 3 weeks ago
• qMRLab / qMRLab
  Quantitative MRI Made Easy with qMRLab: MRI software for data Simulation, analysis and visualization
  ☆162Updated last week
• SlicerDMRI / whitematteranalysis
  White matter tractography clustering and more...
  ☆71Updated last week
• MIC-DKFZ / TractSeg
  Automatic White Matter Bundle Segmentation
  ☆233Updated last year
• daducci / AMICO
  Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data
  ☆106Updated 6 months ago
• UNFmontreal / Dcm2Bids
  Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure
  ☆167Updated last week
• PennLINC / qsiprep
  Preprocessing of diffusion MRI
  ☆142Updated this week
• scilus / scilpy
  The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox
  ☆63Updated this week
• AthenaEPI / dmipy
  The open source toolbox for reproducible diffusion MRI-based microstructure estimation
  ☆99Updated last month
• neuronets / nobrainer
  A framework for developing neural network models for 3D image processing.
  ☆159Updated 3 months ago
• hMRI-group / hMRI-toolbox
  A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
  ☆62Updated this week
• layerfMRI / LAYNII
  Stand alone fMRI software suite for layer-fMRI analyses.
  ☆91Updated 2 months ago
• Washington-University / HCPpipelines
  Processing pipelines for the HCP
  ☆550Updated this week
• poldracklab / pydeface
  defacing utility for MRI images
  ☆113Updated last year
• SlicerDMRI / SlicerDMRI
  Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.
  ☆78Updated last month
• yeatmanlab / AFQ
  Automated Fiber Quantification
  ☆76Updated 10 months ago
• Washington-University / gradunwarp
  Gradient Unwarping in Python
  ☆34Updated 3 weeks ago
• BBillot / SynthSR
  A framework for joint super-resolution and image synthesis, without requiring real training data
  ☆150Updated 9 months ago
• nipreps / niworkflows
  Common workflows for MRI (anatomical, functional, diffusion, etc)
  ☆91Updated this week
• pnlbwh / dMRIharmonization
  Multi-site dMRI harmonization
  ☆46Updated last week
• NYU-DiffusionMRI / DESIGNER-v1
  Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline
  ☆51Updated 10 months ago
• Jfortin1 / ComBatHarmonization
  Harmonization of multi-site imaging data with ComBat
  ☆271Updated last year
• MASILab / Synb0-DISCO
  Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps
  ☆64Updated 6 months ago
• vistalab / vistasoft
  VISTASOFT is the main software repository of the VISTA lab at Stanford University.
  ☆148Updated last month
• ANTsX / ANTsPyNet
  Pre-trained models and utilities for deep learning on medical images in Python
  ☆204Updated this week