Alternatives and similar repositories for mrtrix3:

Users that are interested in mrtrix3 are comparing it to the libraries listed below

• nipy / heudiconv
  Flexible DICOM conversion into structured directory layouts
  ☆247Updated last week
• nipreps / mriqc
  Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
  ☆315Updated last month
• afni / afni
  Official AFNI source and documentation
  ☆168Updated this week
• MIC-DKFZ / TractSeg
  Automatic White Matter Bundle Segmentation
  ☆234Updated last year
• frankyeh / DSI-Studio
  A Tractography Tool for Diffusion MRI
  ☆129Updated this week
• UNFmontreal / Dcm2Bids
  Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure
  ☆172Updated 2 months ago
• PennLINC / qsiprep
  Preprocessing of diffusion MRI
  ☆153Updated last month
• nipreps / smriprep
  Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
  ☆138Updated 3 weeks ago
• AthenaEPI / dmipy
  The open source toolbox for reproducible diffusion MRI-based microstructure estimation
  ☆105Updated 3 months ago
• layerfMRI / LAYNII
  Stand alone fMRI software suite for layer-fMRI analyses.
  ☆91Updated 3 weeks ago
• Washington-University / HCPpipelines
  Processing pipelines for the HCP
  ☆563Updated this week
• daducci / AMICO
  Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data
  ☆108Updated 2 months ago
• BIC-MNI / minc-toolkit-v2
  Version 2 of the minc-toolkit, uses tools based on ITK version 4.x
  ☆53Updated last week
• nipreps / niworkflows
  Common workflows for MRI (anatomical, functional, diffusion, etc)
  ☆94Updated last week
• scilus / scilpy
  The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox
  ☆65Updated 2 weeks ago
• xiangruili / dicm2nii
  DICOM to NIfTI conversion, NIfTI tools
  ☆95Updated 7 months ago
• SlicerDMRI / whitematteranalysis
  White matter tractography clustering and more...
  ☆72Updated 2 months ago
• cMadan / openMorph
  Curated list of open-access databases with human structural MRI data
  ☆127Updated 5 years ago
• andrewjahn / AndysBrainBook
  This repository contains the files that generate Andy's Brain Book on ReadTheDocs.
  ☆189Updated last week
• neuronets / nobrainer
  A framework for developing neural network models for 3D image processing.
  ☆159Updated 3 weeks ago
• hMRI-group / hMRI-toolbox
  A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
  ☆64Updated last week
• MICA-MNI / BrainSpace
  BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics data…
  ☆208Updated last month
• Washington-University / workbench
  Connectome Workbench
  ☆196Updated last week
• bids-standard / bids-specification
  Brain Imaging Data Structure (BIDS) Specification
  ☆303Updated this week
• yeatmanlab / AFQ
  Automated Fiber Quantification
  ☆77Updated last year
• MASILab / Synb0-DISCO
  Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps
  ☆69Updated 8 months ago
• Donders-Institute / bidscoin
  BIDScoin converts your source-level neuroimaging data to BIDS
  ☆137Updated this week
• qMRLab / qMRLab
  Quantitative MRI Made Easy with qMRLab: MRI software for data Simulation, analysis and visualization
  ☆167Updated last week
• neurodata / neuroparc
  ☆174Updated last year
• Jfortin1 / ComBatHarmonization
  Harmonization of multi-site imaging data with ComBat
  ☆284Updated last year