Alternatives and similar repositories for mrtrix3:

Users that are interested in mrtrix3 are comparing it to the libraries listed below

• nipreps / mriqc
  Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
  ☆319Updated this week
• nipy / heudiconv
  Flexible DICOM conversion into structured directory layouts
  ☆252Updated last month
• frankyeh / DSI-Studio
  A Tractography Tool for Diffusion MRI
  ☆131Updated this week
• MIC-DKFZ / TractSeg
  Automatic White Matter Bundle Segmentation
  ☆239Updated last year
• PennLINC / qsiprep
  Preprocessing of diffusion MRI
  ☆153Updated last week
• UNFmontreal / Dcm2Bids
  Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure
  ☆175Updated this week
• afni / afni
  Official AFNI source and documentation
  ☆170Updated this week
• daducci / AMICO
  Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data
  ☆109Updated 3 months ago
• AthenaEPI / dmipy
  The open source toolbox for reproducible diffusion MRI-based microstructure estimation
  ☆105Updated 5 months ago
• BIC-MNI / minc-toolkit-v2
  Version 2 of the minc-toolkit, uses tools based on ITK version 4.x
  ☆53Updated this week
• neuronets / nobrainer
  A framework for developing neural network models for 3D image processing.
  ☆162Updated last month
• SlicerDMRI / whitematteranalysis
  White matter tractography clustering and more...
  ☆76Updated last month
• scilus / scilpy
  The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox
  ☆68Updated this week
• yeatmanlab / AFQ
  Automated Fiber Quantification
  ☆77Updated last year
• layerfMRI / LAYNII
  Stand alone fMRI software suite for layer-fMRI analyses.
  ☆91Updated this week
• nipreps / smriprep
  Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
  ☆139Updated last week
• hMRI-group / hMRI-toolbox
  A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
  ☆69Updated this week
• Washington-University / workbench
  Connectome Workbench
  ☆199Updated this week
• xiangruili / dicm2nii
  DICOM to NIfTI conversion, NIfTI tools
  ☆95Updated 8 months ago
• SlicerDMRI / SlicerDMRI
  Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.
  ☆79Updated 2 months ago
• UCL / PETPVC
  Partial Volume Correction in PET
  ☆58Updated 4 months ago
• BioMedIA / dhcp-structural-pipeline
  structural analysis of neonatal brain MRI scans
  ☆53Updated 3 years ago
• MASILab / Synb0-DISCO
  Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps
  ☆69Updated 9 months ago
• qMRLab / qMRLab
  Quantitative MRI Made Easy with qMRLab: MRI software for data Simulation, analysis and visualization
  ☆167Updated last month
• Washington-University / gradunwarp
  Gradient Unwarping in Python
  ☆35Updated 4 months ago
• poldracklab / pydeface
  defacing utility for MRI images
  ☆119Updated last year
• ANTsX / ANTsPyNet
  Pre-trained models and utilities for deep learning on medical images in Python
  ☆215Updated last week
• rordenlab / niimath
  niimath - a clone of fslmaths. Try the live demo:
  ☆60Updated 4 months ago
• CoBrALab / MAGeTbrain
  Multiple Automatically Generated Templates brain segmentation algorithm
  ☆49Updated 10 months ago
• yeatmanlab / pyAFQ
  Please visit our new location: https://github.com/tractometry/pyAFQ
  ☆60Updated 6 months ago