Alternatives and similar repositories for mrtrix3

Users that are interested in mrtrix3 are comparing it to the libraries listed below

• nipreps / mriqc
  Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
  ☆332Updated 2 months ago
• daducci / AMICO
  Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data
  ☆112Updated 6 months ago
• nipy / heudiconv
  Flexible DICOM conversion into structured directory layouts
  ☆263Updated this week
• UCL / PETPVC
  Partial Volume Correction in PET
  ☆59Updated 7 months ago
• frankyeh / DSI-Studio
  A Tractography Tool for Diffusion MRI
  ☆136Updated 2 weeks ago
• PennLINC / qsiprep
  Preprocessing of diffusion MRI
  ☆158Updated last week
• UNFmontreal / Dcm2Bids
  Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure
  ☆182Updated last month
• Washington-University / gradunwarp
  Gradient Unwarping in Python
  ☆37Updated 7 months ago
• scilus / scilpy
  The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox
  ☆73Updated this week
• hMRI-group / hMRI-toolbox
  A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
  ☆70Updated last week
• xiangruili / dicm2nii
  DICOM to NIfTI conversion, NIfTI tools
  ☆99Updated 11 months ago
• AthenaEPI / dmipy
  The open source toolbox for reproducible diffusion MRI-based microstructure estimation
  ☆107Updated 8 months ago
• SlicerDMRI / whitematteranalysis
  White matter tractography clustering and more...
  ☆77Updated last month
• yeatmanlab / AFQ
  Automated Fiber Quantification
  ☆77Updated last year
• MASILab / PreQual
  An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images
  ☆52Updated last year
• MIC-DKFZ / TractSeg
  Automatic White Matter Bundle Segmentation
  ☆244Updated last year
• nipreps / smriprep
  Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
  ☆144Updated this week
• afni / afni
  Official AFNI source and documentation
  ☆175Updated this week
• rordenlab / niimath
  niimath - a clone of fslmaths. Try the live demo:
  ☆66Updated last week
• qMRLab / qMRLab
  Quantitative MRI Made Easy with qMRLab: MRI software for data Simulation, analysis and visualization
  ☆170Updated 2 weeks ago
• BIC-MNI / minc-toolkit-v2
  Version 2 of the minc-toolkit, uses tools based on ITK version 4.x
  ☆53Updated 2 months ago
• spinicist / QUIT
  A set of tools for processing Quantitative MR Images
  ☆64Updated 3 weeks ago
• cMadan / openMorph
  Curated list of open-access databases with human structural MRI data
  ☆129Updated 6 years ago
• JosePMarques / MP2RAGE-related-scripts
  MP2RAGE Scripts - T1 map correction & Background noise removal
  ☆61Updated 2 years ago
• neuronets / nobrainer
  A framework for developing neural network models for 3D image processing.
  ☆165Updated last month
• mezera / mrQ
  mrQ_BoxJoinBox
  ☆22Updated last year
• layerfMRI / LAYNII
  Stand alone fMRI software suite for layer-fMRI analyses.
  ☆98Updated last month
• MASILab / Synb0-DISCO
  Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps
  ☆73Updated last year
• yeatmanlab / pyAFQ
  Please visit our new location: https://github.com/tractometry/pyAFQ
  ☆60Updated 9 months ago
• pnlbwh / dMRIharmonization
  Multi-site dMRI harmonization
  ☆48Updated 2 months ago