MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density
☆351Aug 12, 2026Updated this week
Alternatives and similar repositories for mrtrix3
Users that are interested in mrtrix3 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automatic White Matter Bundle Segmentation☆265Feb 23, 2026Updated 5 months ago
- Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline☆51Mar 5, 2024Updated 2 years ago
- MRtrix3Tissue adds capabilities for 3-Tissue CSD modelling and analysis to a complete version of MRtrix3.☆18Apr 5, 2024Updated 2 years ago
- Processing pipelines for the HCP☆651Updated this week
- A Tractography Tool for Diffusion MRI☆161Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Preprocessing of diffusion MRI☆186Updated this week
- The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox☆97Jul 20, 2026Updated 3 weeks ago
- dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…☆77Feb 14, 2026Updated 6 months ago
- Please visit our new location: https://github.com/tractometry/pyAFQ☆60Oct 10, 2024Updated last year
- DIPY is the paragon 3D/4D+ medical imaging library in Python. Contains generic methods for spatial normalization, signal processing, mach…☆835Aug 11, 2026Updated last week
- Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data☆130Dec 19, 2025Updated 7 months ago
- Neuroimaging analysis and visualization suite☆867Updated this week
- Official AFNI source and documentation☆193Updated this week
- Connectome Workbench☆225Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Generate subject connectomes from raw BIDS data & perform inter-subject connection density normalisation, using the MRtrix3 software pac…☆55Apr 26, 2026Updated 3 months ago
- dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC☆1,181Updated this week
- Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain☆370Jul 20, 2026Updated 3 weeks ago
- A statistics and context decoding toolbox for neuroimaging.☆118May 4, 2026Updated 3 months ago
- Reconstruction of preprocessed q-space images (dMRI)☆23Updated this week
- Advanced Normalization Tools (ANTs)☆1,495Updated this week
- R library for structural neuroimaging. Provides high-level functions to access (read and write) and visualize surface-based brain morphom…☆77Aug 9, 2026Updated last week
- Flexible DICOM conversion into structured directory layouts☆283Aug 10, 2026Updated last week
- Resources related to the Free Waveform Sequence (FWF)☆25Feb 5, 2026Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)☆84Updated this week
- Implementation of the White Matter Query Language and associated tools for dMRI white matter tract extraction and analysis☆32Jul 24, 2025Updated last year
- A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://ww…☆31Jul 8, 2026Updated last month
- TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity☆63Sep 23, 2024Updated last year
- Workflows and interfaces for neuroimaging packages☆834Jul 20, 2026Updated 3 weeks ago
- Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline Version 2☆33Aug 4, 2026Updated 2 weeks ago
- MRtrix scripts to generate dense weighted structural connectomes from the Human Connectome Project "minimally pre-processed" diffusion MR…☆22Dec 23, 2022Updated 3 years ago
- Automated Fiber Quantification☆78Mar 6, 2024Updated 2 years ago
- ☆18Feb 6, 2026Updated 6 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual interv…☆743Updated this week
- Common workflows for MRI (anatomical, functional, diffusion, etc)☆116Aug 10, 2026Updated last week
- GLSL surface rendering source code. Compiled versions available from NITRC. Loads 3DS, CTM, DXF, FreeSurfer, GII (GIfTI), GTS, LWO2, MS3D…☆136Apr 27, 2026Updated 3 months ago
- BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics data…☆250Jun 9, 2026Updated 2 months ago
- ☆750Updated this week
- GE HealthCare MRI research☆20Jun 30, 2025Updated last year
- The open source toolbox for reproducible diffusion MRI-based microstructure estimation☆121Jul 15, 2026Updated last month