Alternatives and similar repositories for mrtrix3

Users that are interested in mrtrix3 are comparing it to the libraries listed below

• nipreps / mriqc
  Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
  ☆342Updated last month
• frankyeh / DSI-Studio
  A Tractography Tool for Diffusion MRI
  ☆151Updated 3 weeks ago
• nipy / heudiconv
  Flexible DICOM conversion into structured directory layouts
  ☆272Updated last month
• scilus / scilpy
  The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox
  ☆84Updated 3 weeks ago
• PennLINC / qsiprep
  Preprocessing of diffusion MRI
  ☆171Updated 2 weeks ago
• afni / afni
  Official AFNI source and documentation
  ☆183Updated last week
• Washington-University / gradunwarp
  Gradient Unwarping in Python
  ☆39Updated last year
• hMRI-group / hMRI-toolbox
  A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
  ☆77Updated this week
• layerfMRI / LAYNII
  Stand alone fMRI software suite for layer-fMRI analyses.
  ☆104Updated last month
• MIC-DKFZ / TractSeg
  Automatic White Matter Bundle Segmentation
  ☆249Updated 2 years ago
• SlicerDMRI / whitematteranalysis
  White matter tractography clustering and more...
  ☆79Updated 6 months ago
• nipreps / smriprep
  Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
  ☆160Updated this week
• daducci / AMICO
  Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data
  ☆122Updated last week
• spinicist / QUIT
  A set of tools for processing Quantitative MR Images
  ☆63Updated 5 months ago
• yeatmanlab / AFQ
  Automated Fiber Quantification
  ☆77Updated last year
• rordenlab / niimath
  niimath - a clone of fslmaths. Try the live demo:
  ☆71Updated 2 months ago
• cMadan / openMorph
  Curated list of open-access databases with human structural MRI data
  ☆129Updated 6 years ago
• UNFmontreal / Dcm2Bids
  Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure
  ☆190Updated 2 weeks ago
• xiangruili / dicm2nii
  DICOM to NIfTI conversion, NIfTI tools
  ☆102Updated 2 weeks ago
• UCL / PETPVC
  Partial Volume Correction in PET
  ☆65Updated last year
• nipreps / niworkflows
  Common workflows for MRI (anatomical, functional, diffusion, etc)
  ☆107Updated last week
• MASILab / PreQual
  An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images
  ☆52Updated last year
• AthenaEPI / dmipy
  The open source toolbox for reproducible diffusion MRI-based microstructure estimation
  ☆113Updated last year
• neuronets / nobrainer
  A framework for developing neural network models for 3D image processing.
  ☆167Updated 3 weeks ago
• BIC-MNI / minc-toolkit-v2
  Version 2 of the minc-toolkit, uses tools based on ITK version 4.x
  ☆53Updated 7 months ago
• nipreps / dmriprep
  dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…
  ☆73Updated 2 months ago
• johncolby / along-tract-stats
  A MATLAB toolbox for performing along-tract analysis of diffusion tensor imaging (DTI) MRI tractography data.
  ☆49Updated 12 years ago
• poldracklab / pydeface
  defacing utility for MRI images
  ☆131Updated last year
• qMRLab / qMRLab
  Quantitative MRI Made Easy with qMRLab: MRI software for data Simulation, analysis and visualization
  ☆174Updated 2 weeks ago
• mezera / mrQ
  mrQ_BoxJoinBox
  ☆23Updated 2 years ago