Python tools for querying and manipulating BIDS datasets.
☆258Apr 6, 2026Updated this week
Alternatives and similar repositories for pybids
Users that are interested in pybids are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Brain Imaging Data Structure (BIDS) Specification☆352Updated this week
- Validator for the Brain Imaging Data Structure☆184Dec 11, 2025Updated 4 months ago
- A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.☆219Apr 2, 2026Updated last week
- Fit Linear Models to BIDS Datasets☆80Mar 9, 2026Updated last month
- Flexible DICOM conversion into structured directory layouts☆276Mar 30, 2026Updated last week
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.☆168Mar 30, 2026Updated last week
- Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure☆194Mar 6, 2026Updated last month
- fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual interv…☆725Updated this week
- BIDScoin converts your source-level neuroimaging data to BIDS☆152Mar 21, 2026Updated 3 weeks ago
- Generate custom Docker and Singularity images, and minimize existing containers☆355Mar 24, 2026Updated 2 weeks ago
- Common workflows for MRI (anatomical, functional, diffusion, etc)☆109Updated this week
- The Starter-kit has moved to the new BIDS website.☆277Feb 21, 2025Updated last year
- This an example app that can serve as a template.☆17Mar 16, 2026Updated 3 weeks ago
- Pydra Dataflow Engine☆137Mar 30, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain☆351Jan 28, 2026Updated 2 months ago
- defacing utility for MRI images☆139Updated this week
- Schedule and resources from the OHBM Open Science Room: Rome 2019☆16Jun 25, 2019Updated 6 years ago
- Making neuroimaging open from the grounds (consent form) and up (tools)☆45Mar 13, 2026Updated 3 weeks ago
- Workflows and interfaces for neuroimaging packages☆825Mar 30, 2026Updated last week
- A setup for automatic generation of shareable, version-controlled BIDS datasets from MR scanners☆53May 12, 2025Updated 11 months ago
- Pycortex is a python-based toolkit for surface visualization of fMRI data☆654Apr 4, 2026Updated last week
- get grabby with file trees☆13Mar 27, 2024Updated 2 years ago
- dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…☆73Feb 14, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Machine learning for NeuroImaging in Python☆1,384Updated this week
- Python3 library to format physiological files in BIDS. At the moment, it supports Acqknowledge and Labchart. BrainHack participants, chec…☆65Mar 16, 2026Updated 3 weeks ago
- BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics data…☆245Feb 9, 2026Updated 2 months ago
- The TemplateFlow Archive - A DataLad super-dataset☆94Mar 17, 2026Updated 3 weeks ago
- Tool for automatic denoising, denoising strategies comparison, and functional connectivity data quality control.☆48Apr 17, 2023Updated 2 years ago
- Preprocessing of diffusion MRI☆178Mar 17, 2026Updated 3 weeks ago
- Utility functions for working with DICOM and BIDS neuroimaging data☆65Nov 6, 2025Updated 5 months ago
- Bootstrapped Analysis of Stable Clusters- A semi-automated fMRI individual and group level functional parcellation technique☆26Oct 11, 2019Updated 6 years ago
- A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning☆125Feb 1, 2024Updated 2 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- A toolbox for comparing brain maps☆320Apr 23, 2025Updated 11 months ago
- ☆729Mar 25, 2026Updated 2 weeks ago
- GLSL surface rendering source code. Compiled versions available from NITRC. Loads 3DS, CTM, DXF, FreeSurfer, GII (GIfTI), GTS, LWO2, MS3D…☆133Jul 24, 2025Updated 8 months ago
- Brain Imaging Analysis Kit☆370Apr 3, 2026Updated last week
- The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets☆132Nov 8, 2022Updated 3 years ago
- Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)☆162Updated this week
- Fragments FreeSurfer parcellation annotation in N-equal sized parcels☆29Aug 13, 2020Updated 5 years ago