BIDS app wrapping recon-all from FreeSurfer
☆47Jul 24, 2026Updated last month
Alternatives and similar repositories for freesurfer
Users that are interested in freesurfer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Dockerfile templates commonly used in BIDS Apps☆11Mar 16, 2026Updated 6 months ago
- dHCP structural pipeline☆16Jul 13, 2021Updated 5 years ago
- Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)☆169Sep 9, 2026Updated last week
- Browser-based version of FreeView, built on top of niivue☆24Updated this week
- dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…☆77Feb 14, 2026Updated 7 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure☆207Updated this week
- A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data☆82Sep 1, 2026Updated 2 weeks ago
- BIDS App Bootstrap (BABS)☆13Sep 11, 2026Updated last week
- ☆19May 6, 2021Updated 5 years ago
- Optimized cerebral cortical surface mapping of neurite properties using diffsion magnetic resonace imaging (dMRI)☆16May 16, 2023Updated 3 years ago
- A neuroscience library for Python, intended to complement the existing nibabel library.☆135Sep 13, 2026Updated last week
- BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics data…☆252Jun 9, 2026Updated 3 months ago
- Python scripts for shape analysis of neuroimaging data (wrapping around shapeDNA and FreeSurfer)☆21Feb 3, 2021Updated 5 years ago
- PET Unified Pipeline☆25Oct 13, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Python tools for querying and manipulating BIDS datasets.☆268Updated this week
- MOVED TO https://github.com/nipreps/dmriprep☆17Dec 26, 2022Updated 3 years ago
- A toolbox for working with Allen Human Brain Atlas microarray expression data☆115Sep 3, 2024Updated 2 years ago
- Piloting a new image object for neuroimaging based on XArray☆11Jul 21, 2026Updated last month
- Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data☆78Mar 17, 2021Updated 5 years ago
- A BIDS App for minimal preprocessing using the HCP Pipelines☆38Mar 16, 2026Updated 6 months ago
- Code for simulations and empirical analyses for the article "How to control for confounds in decoding analyses of neuroimaging data"☆11Aug 24, 2018Updated 8 years ago
- parallel FSL processing without requiring SGE☆28Sep 3, 2021Updated 5 years ago
- Flexible DICOM conversion into structured directory layouts☆284Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Common workflows for MRI (anatomical, functional, diffusion, etc)☆118Updated this week
- fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual interv…☆755Updated this week
- Python3 library to format physiological files in BIDS. At the moment, it supports Acqknowledge and Labchart. BrainHack participants, chec…☆66Aug 31, 2026Updated 2 weeks ago
- fit response shapes from signal time-courses☆12May 8, 2026Updated 4 months ago
- a BIDS app for pseudo-anonymization of neuroimaging data☆56Oct 24, 2025Updated 10 months ago
- Benchmark denoising strategies available from fmriprep.☆17Dec 18, 2025Updated 9 months ago
- ☆12Jun 28, 2020Updated 6 years ago
- Official public repository for the XCP Engine. This tool is deprecated in favor of XCP-D and ASLPrep.☆65Apr 19, 2023Updated 3 years ago
- ICA-AROMA Software Package: a data-driven method to identify and remove head motion-related artefacts from functional MRI data.☆108May 17, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A new tool for harmonizing volumetric MRI data from unseen scanners (Garcia-Dias et al. 2020)☆18Jan 6, 2023Updated 3 years ago
- A data analysis package for high-dimensional, multi-block data.☆12Jan 13, 2022Updated 4 years ago
- BIDS App containing an instance of the SPM software.☆15Mar 17, 2026Updated 6 months ago
- Preprocessing of diffusion MRI