bids-apps / freesurferLinks
BIDS app wrapping recon-all from FreeSurfer
☆43Updated 2 months ago
Alternatives and similar repositories for freesurfer
Users that are interested in freesurfer are comparing it to the libraries listed below
Sorting:
- dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…☆73Updated last month
- Processing tools for high-resolution neuroimaging☆73Updated last year
- The TemplateFlow Archive - A DataLad super-dataset☆93Updated 3 weeks ago
- Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data☆78Updated 4 years ago
- VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.☆74Updated 5 months ago
- Preprocessing of diffusion MRI☆169Updated this week
- A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data☆67Updated 2 weeks ago
- Tools for mesh surface-based operations☆38Updated 9 months ago
- Common workflows for MRI (anatomical, functional, diffusion, etc)☆106Updated this week
- niimath - a clone of fslmaths. Try the live demo:☆71Updated last month
- Multimodal Surface Matching with Higher order Clique Reduction: Mac OS and Linux binaries☆42Updated 3 years ago
- Preprocessing of arterial spin labeling (ASL) data☆52Updated 2 weeks ago
- Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes☆43Updated this week
- A BIDS App for minimal preprocessing using the HCP Pipelines☆37Updated 2 months ago
- Load fMRIprep confounds in python☆38Updated 3 years ago
- multi atlas transfer tools for neuroimaging (maTT)☆67Updated last year
- Utility functions for working with DICOM and BIDS neuroimaging data☆64Updated last month
- ICA-AROMA Software Package: a data-driven method to identify and remove head motion-related artefacts from functional MRI data.☆104Updated last year
- TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity☆60Updated last year
- Nuisance removal tool for fMRI data☆57Updated last year
- fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/☆47Updated this week
- Stand alone fMRI software suite for layer-fMRI analyses.☆104Updated 3 weeks ago
- A statistics and context decoding toolbox for neuroimaging.☆113Updated 2 weeks ago
- ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data☆106Updated this week
- The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets☆128Updated 3 years ago
- Post-processing of fMRIPrep, NiBabies, and HCP outputs☆102Updated this week
- ☆39Updated 3 years ago
- For calculating exact geodesic distances on cortical surface meshes☆53Updated last year
- Python interface for generating coordinate tables and region labels from statistical MRI images☆113Updated 2 weeks ago
- PET2BIDS helps you convert your PET data into BIDS! raw PET scanner files (e.g. ecat, dicom) and additional side files like .e.g excel sh…☆31Updated 2 weeks ago