BIDS app wrapping recon-all from FreeSurfer
☆45Mar 16, 2026Updated last month
Alternatives and similar repositories for freesurfer
Users that are interested in freesurfer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Dockerfile templates commonly used in BIDS Apps☆11Mar 16, 2026Updated last month
- dHCP structural pipeline☆16Jul 13, 2021Updated 4 years ago
- Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)☆163Apr 21, 2026Updated last week
- dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…☆74Feb 14, 2026Updated 2 months ago
- Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure☆196Mar 6, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data☆79Mar 18, 2026Updated last month
- Optimized cerebral cortical surface mapping of neurite properties using diffsion magnetic resonace imaging (dMRI)☆16May 16, 2023Updated 2 years ago
- BIDS App Bootstrap (BABS)☆12Apr 22, 2026Updated last week
- ☆19May 6, 2021Updated 4 years ago
- A neuroscience library for Python, intended to complement the existing nibabel library.☆131Oct 14, 2025Updated 6 months ago
- Python scripts for shape analysis of neuroimaging data (wrapping around shapeDNA and FreeSurfer)☆21Feb 3, 2021Updated 5 years ago
- PET Unified Pipeline☆25Oct 13, 2020Updated 5 years ago
- BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics data…☆247Feb 9, 2026Updated 2 months ago
- Python tools for querying and manipulating BIDS datasets.☆257Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- MOVED TO https://github.com/nipreps/dmriprep☆17Dec 26, 2022Updated 3 years ago
- Julia package for reconstructing fiber trajectories from multi-scale, multi-modal imaging data☆21Apr 24, 2025Updated last year
- A toolbox for working with Allen Human Brain Atlas microarray expression data☆114Sep 3, 2024Updated last year
- Piloting a new image object for neuroimaging based on XArray☆11Feb 23, 2025Updated last year
- Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data☆78Mar 17, 2021Updated 5 years ago
- Code for simulations and empirical analyses for the article "How to control for confounds in decoding analyses of neuroimaging data"☆11Aug 24, 2018Updated 7 years ago
- Common workflows for MRI (anatomical, functional, diffusion, etc)☆109Apr 21, 2026Updated last week
- parallel FSL processing without requiring SGE☆28Sep 3, 2021Updated 4 years ago
- a BIDS app for pseudo-anonymization of neuroimaging data☆54Oct 24, 2025Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Flexible DICOM conversion into structured directory layouts☆276Updated this week
- Python3 library to format physiological files in BIDS. At the moment, it supports Acqknowledge and Labchart. BrainHack participants, chec…☆65Apr 15, 2026Updated 2 weeks ago
- Benchmark denoising strategies available from fmriprep.☆16Dec 18, 2025Updated 4 months ago
- fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual interv…☆730Updated this week
- A set of general tools.☆17Mar 28, 2026Updated last month
- A BIDS App for minimal preprocessing using the HCP Pipelines☆37Mar 16, 2026Updated last month
- ☆12Jun 28, 2020Updated 5 years ago
- ICA-AROMA Software Package: a data-driven method to identify and remove head motion-related artefacts from functional MRI data.☆105May 17, 2024Updated last year
- A new tool for harmonizing volumetric MRI data from unseen scanners (Garcia-Dias et al. 2020)☆18Jan 6, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- BIDS App containing an instance of the SPM software.☆15Mar 17, 2026Updated last month
- Preprocessing of diffusion MRI☆180Apr 20, 2026Updated last week
- Dictionary of Functional Modes for brain imaging☆26Feb 1, 2021Updated 5 years ago
- Official public repository for the XCP Engine. This tool is deprecated in favor of XCP-D and ASLPrep.☆65Apr 19, 2023Updated 3 years ago
- Software platform for clinical neuroimaging studies☆278Apr 23, 2026Updated last week
- CIVET Installer☆31Jan 29, 2022Updated 4 years ago
- A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.☆218Apr 21, 2026Updated last week