bids-apps / freesurfer
BIDS app wrapping recon-all from FreeSurfer
☆42Updated 5 months ago
Alternatives and similar repositories for freesurfer:
Users that are interested in freesurfer are comparing it to the libraries listed below
- Tools for mesh surface-based operations☆35Updated last month
- Common workflows for MRI (anatomical, functional, diffusion, etc)☆94Updated 3 weeks ago
- multi atlas transfer tools for neuroimaging (maTT)☆64Updated 4 months ago
- VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.☆73Updated 9 months ago
- Processing tools for high-resolution neuroimaging☆72Updated 4 months ago
- Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data☆76Updated 4 years ago
- dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…☆67Updated last year
- A BIDS App for minimal preprocessing using the HCP Pipelines☆35Updated 5 months ago
- The TemplateFlow Archive - A DataLad super-dataset☆76Updated 11 months ago
- Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes☆34Updated 2 weeks ago
- Multimodal Surface Matching with Higher order Clique Reduction: Mac OS and Linux binaries☆38Updated 2 years ago
- A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data☆63Updated 5 months ago
- ☆35Updated 3 years ago
- A statistics and context decoding toolbox for neuroimaging.☆101Updated 6 months ago
- niimath - a clone of fslmaths. Try the live demo:☆60Updated 3 months ago
- Nuisance removal tool for fMRI data☆56Updated last year
- Load fMRIprep confounds in python☆36Updated 3 years ago
- This is the repository for the JuSpace toolbox allowing for cross-modal correlations between imaging data and positron emission tomograph…☆46Updated this week
- A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)☆66Updated 2 weeks ago
- ComBat Family of Harmonization Methods☆18Updated 6 months ago
- Official public repository for the XCP Engine. This tool is deprecated in favor of XCP-D and ASLPrep.☆64Updated last year
- Generate subject connectomes from raw BIDS data & perform inter-subject connection density normalisation, using the MRtrix3 software pac…☆51Updated last year
- PREEMACS. pipeline for PREprocessing and Extraction of the MACaque brain Surface☆16Updated 10 months ago
- Scripts to prepare MP2RAGE for Freesurfer☆26Updated last year
- ICA-AROMA Software Package: a data-driven method to identify and remove head motion-related artefacts from functional MRI data.☆93Updated 10 months ago
- fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/☆40Updated last month
- Preprocessing of arterial spin labeling (ASL) data☆48Updated this week
- A Python implementation of 'dual-coding'☆41Updated 11 months ago
- To convert Human Connectome projects(HCP) data to BIDS std☆28Updated 2 years ago
- The Midnight Scanning Club Codebase☆33Updated 5 years ago