BIDS app wrapping recon-all from FreeSurfer
☆44Mar 16, 2026Updated this week
Alternatives and similar repositories for freesurfer
Users that are interested in freesurfer are comparing it to the libraries listed below
Sorting:
- Dockerfile templates commonly used in BIDS Apps☆11Updated this week
- dHCP structural pipeline☆15Jul 13, 2021Updated 4 years ago
- Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)☆162Updated this week
- dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…☆73Feb 14, 2026Updated last month
- Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure☆193Mar 6, 2026Updated 2 weeks ago
- A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data☆76Mar 12, 2026Updated last week
- Optimized cerebral cortical surface mapping of neurite properties using diffsion magnetic resonace imaging (dMRI)☆15May 16, 2023Updated 2 years ago
- BIDS App Bootstrap (BABS)☆12Mar 6, 2026Updated 2 weeks ago
- ☆19May 6, 2021Updated 4 years ago
- A neuroscience library for Python, intended to complement the existing nibabel library.☆131Oct 14, 2025Updated 5 months ago
- Python scripts for shape analysis of neuroimaging data (wrapping around shapeDNA and FreeSurfer)☆21Feb 3, 2021Updated 5 years ago
- PET Unified Pipeline☆24Oct 13, 2020Updated 5 years ago
- BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics data…☆243Feb 9, 2026Updated last month
- Python tools for querying and manipulating BIDS datasets.☆256Updated this week
- MOVED TO https://github.com/nipreps/dmriprep☆17Dec 26, 2022Updated 3 years ago
- Julia package for reconstructing fiber trajectories from multi-scale, multi-modal imaging data☆21Apr 24, 2025Updated 10 months ago
- A toolbox for working with Allen Human Brain Atlas microarray expression data☆113Sep 3, 2024Updated last year
- Piloting a new image object for neuroimaging based on XArray☆11Feb 23, 2025Updated last year
- Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data☆78Mar 17, 2021Updated 5 years ago
- Code for simulations and empirical analyses for the article "How to control for confounds in decoding analyses of neuroimaging data"☆11Aug 24, 2018Updated 7 years ago
- Common workflows for MRI (anatomical, functional, diffusion, etc)☆109Updated this week
- parallel FSL processing without requiring SGE☆28Sep 3, 2021Updated 4 years ago
- a BIDS app for pseudo-anonymization of neuroimaging data☆53Oct 24, 2025Updated 4 months ago
- Flexible DICOM conversion into structured directory layouts☆275Jan 22, 2026Updated last month
- Python3 library to format physiological files in BIDS. At the moment, it supports Acqknowledge and Labchart. BrainHack participants, chec…☆65Updated this week
- fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual interv…☆721Mar 10, 2026Updated last week
- Benchmark denoising strategies available from fmriprep.☆16Dec 18, 2025Updated 3 months ago
- A set of general tools.☆15Mar 6, 2026Updated 2 weeks ago
- A BIDS App for minimal preprocessing using the HCP Pipelines☆37Updated this week