Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure
☆209Oct 26, 2026Updated last week
Alternatives and similar repositories for Dcm2Bids
Users that are interested in Dcm2Bids are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Flexible DICOM conversion into structured directory layouts☆286Oct 5, 2026Updated last month
- Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain☆383Updated this week
- A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.☆229Oct 29, 2026Updated last week
- Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)☆169Updated this week
- BIDScoin converts your source-level neuroimaging data to BIDS☆161Oct 22, 2026Updated 2 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual interv…☆762Updated this week
- Utility functions for working with DICOM and BIDS neuroimaging data☆66May 29, 2026Updated 5 months ago
- Python tools for querying and manipulating BIDS datasets.☆271Oct 23, 2026Updated 2 weeks ago
- dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC☆1,210Updated this week
- Preprocessing of arterial spin labeling (ASL) data☆65Updated this week
- Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes☆46Updated this week
- The Starter-kit has moved to the new BIDS website.☆277Aug 20, 2026Updated 2 months ago
- Preprocessing of diffusion MRI☆195Updated this week
- Brain Imaging Data Structure (BIDS) Specification☆375Updated this week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Common workflows for MRI (anatomical, functional, diffusion, etc)☆121Updated this week
- Validator for the Brain Imaging Data Structure☆185Dec 11, 2025Updated 10 months ago
- Automatic BIDS architecture☆16Sep 2, 2024Updated 2 years ago
- Python interface for generating coordinate tables and region labels from statistical MRI images☆127Updated this week
- Neuroimaging analysis and visualization suite☆885Updated this week
- Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data☆78Mar 17, 2021Updated 5 years ago
- Workflows and interfaces for neuroimaging packages☆836Updated this week
- dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…☆79Feb 14, 2026Updated 8 months ago
- TE-dependent analysis of multi-echo fMRI☆193Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data☆131Updated this week
- This repository contains all code for the BLMM toolbox.☆23Jan 31, 2024Updated 2 years ago
- The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox☆103Updated this week
- ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…☆61Updated this week
- BIDS app wrapping recon-all from FreeSurfer☆47Oct 31, 2026Updated last week
- Post-processing of fMRIPrep, NiBabies, and HCP outputs☆120Updated this week
- Fit Linear Models to BIDS Datasets☆82Aug 17, 2026Updated 2 months ago
- A setup for automatic generation of shareable, version-controlled BIDS datasets from MR scanners☆56May 12, 2025Updated last year
- Processing pipelines for the HCP☆661Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Create a BIDS structure for a DICOM folder.☆12Nov 6, 2017Updated 9 years ago
- ☆227Jun 23, 2023Updated 3 years ago
- a BIDS app for pseudo-anonymization of neuroimaging data☆56Oct 24, 2025Updated last year
- PET2BIDS helps you convert your PET data into BIDS! raw PET scanner files (e.g. ecat, dicom) and additional side files like .e.g excel sh…☆34Oct 28, 2026Updated last week
- Load fMRIprep confounds in python☆38Jan 30, 2022Updated 4 years ago
- TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity☆65Sep 23, 2024Updated 2 years ago
- Code Base of the PhysIO Toolbox for Modeling Physiological Noise in fMRI Data (Paper: https://doi.org/10.1016/j.jneumeth.2016.10.019)☆14Oct 21, 2026Updated 2 weeks ago