A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data
☆79Mar 18, 2026Updated 3 weeks ago
Alternatives and similar repositories for fsqc
Users that are interested in fsqc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data☆78Mar 17, 2021Updated 5 years ago
- VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.☆75Dec 27, 2025Updated 3 months ago
- PyTorch implementation of FastSurferCNN☆595Mar 18, 2026Updated 3 weeks ago
- A suite of brain PET processing pipelines☆14Jan 6, 2025Updated last year
- Run ICA-AROMA on fMRIPrep derivatives☆22Apr 1, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Scripts for comparing different fmriprep denoising approaches on quality control functional connectivity (QC-FC) motion, QC-FC distance-d…☆15Oct 20, 2021Updated 4 years ago
- Code to compute and test structural decoupling index (Preti & Van De Ville 2019)☆36Sep 10, 2019Updated 6 years ago
- Post-processing of fMRIPrep, NiBabies, and HCP outputs☆110Updated this week
- rapidtide - a suite of programs for doing time lag correlation analysis on fMRI data☆94Updated this week
- A statistics and context decoding toolbox for neuroimaging.☆118Jan 30, 2026Updated 2 months ago
- dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…☆73Feb 14, 2026Updated 2 months ago
- A conversion tool for creating NDA compatible metadata representation from BIDS datasets.☆16Jul 13, 2025Updated 9 months ago
- BIDS app wrapping recon-all from FreeSurfer☆45Mar 16, 2026Updated 3 weeks ago
- ☆51Nov 23, 2021Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Displays regional stats on Freesurfer surfaces in MATLAB☆16Sep 18, 2020Updated 5 years ago
- Scripts for MRI preprocessing☆10Oct 11, 2020Updated 5 years ago
- Ironsmith is a comprehensive, fully automated pipeline for creating and processing Quantitative Susceptibility Maps (QSM), extracting QSM…☆25Dec 11, 2023Updated 2 years ago
- Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain☆351Jan 28, 2026Updated 2 months ago
- Multimodal Surface Matching with Higher order Clique Reduction: Mac OS and Linux binaries☆42Jul 21, 2022Updated 3 years ago
- Retrospective motion-correction of 3D MRI k-space data in Matlab☆46Dec 18, 2025Updated 3 months ago
- BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics data…☆245Feb 9, 2026Updated 2 months ago
- LST-AI - Deep Learning Ensemble for Accurate MS Lesion Segmentation☆45Mar 24, 2025Updated last year
- ciftiTools R package☆58Mar 24, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)☆162Apr 6, 2026Updated last week
- The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets☆132Nov 8, 2022Updated 3 years ago
- PET2BIDS helps you convert your PET data into BIDS! raw PET scanner files (e.g. ecat, dicom) and additional side files like .e.g excel sh…☆31Mar 20, 2026Updated 3 weeks ago
- Python scripts for shape analysis of neuroimaging data (wrapping around shapeDNA and FreeSurfer)☆21Feb 3, 2021Updated 5 years ago
- The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface …☆177Jan 15, 2026Updated 2 months ago
- Python utilities for medical image and surface-based analysis☆38Apr 1, 2026Updated last week
- REACT: Receptor-Enriched Analysis of functional Connectivity by Targets☆25Aug 23, 2023Updated 2 years ago
- Linear mixed effects (LME) Matlab toolbox. This toolbox implements both univariate and mass-univariate analyses.☆12May 17, 2019Updated 6 years ago
- A repository for the Quantitative Imaging Toolkit (QIT)☆25Mar 11, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆48Mar 31, 2026Updated 2 weeks ago
- Core tools for Cocoan Lab☆25Jan 29, 2026Updated 2 months ago
- matplotlib mesh surface plotter☆30Jul 25, 2025Updated 8 months ago
- DL+DiReCT - Direct Cortical Thickness Estimation using Deep Learning-based Anatomy Segmentation and Cortex Parcellation☆31Apr 16, 2025Updated 11 months ago
- A repository for notebooks associated with FMRIPREP☆17Oct 25, 2018Updated 7 years ago
- WM tract atlases for the human (HCP and UK Biobank) and Macaque brain and connectivity blueprint atlases for the human (HCP) and macaque …☆18Dec 23, 2021Updated 4 years ago
- Brainconn - an R package for visualising brain connectivity data in 2D and interactive 3D☆65Sep 18, 2025Updated 6 months ago