A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data
☆82Aug 20, 2026Updated last week
Alternatives and similar repositories for fsqc
Users that are interested in fsqc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data☆78Mar 17, 2021Updated 5 years ago
- VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.☆76Dec 27, 2025Updated 8 months ago
- Run ICA-AROMA on fMRIPrep derivatives☆24Apr 1, 2026Updated 5 months ago
- PyTorch implementation of FastSurferCNN☆630Updated this week
- A suite of brain PET processing pipelines☆14Jan 6, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Scripts for comparing different fmriprep denoising approaches on quality control functional connectivity (QC-FC) motion, QC-FC distance-d…☆15Oct 20, 2021Updated 4 years ago
- Code to compute and test structural decoupling index (Preti & Van De Ville 2019)☆38Sep 10, 2019Updated 6 years ago
- Post-processing of fMRIPrep, NiBabies, and HCP outputs☆118Updated this week
- A statistics and context decoding toolbox for neuroimaging.☆118May 4, 2026Updated 3 months ago
- rapidtide - a suite of programs for doing time lag correlation analysis on fMRI data☆96Updated this week
- ☆51Nov 23, 2021Updated 4 years ago
- Ironsmith is a comprehensive, fully automated pipeline for creating and processing Quantitative Susceptibility Maps (QSM), extracting QSM…☆25Dec 11, 2023Updated 2 years ago
- dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…☆77Feb 14, 2026Updated 6 months ago
- BIDS app wrapping recon-all from FreeSurfer☆46Jul 24, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Displays regional stats on Freesurfer surfaces in MATLAB☆16Sep 18, 2020Updated 5 years ago
- Scripts for MRI preprocessing☆10Oct 11, 2020Updated 5 years ago
- Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain☆371Jul 20, 2026Updated last month
- WM tract atlases for the human (HCP and UK Biobank) and Macaque brain and connectivity blueprint atlases for the human (HCP) and macaque …☆21Dec 23, 2021Updated 4 years ago
- BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics data…☆251Jun 9, 2026Updated 2 months ago
- Retrospective motion-correction of 3D MRI k-space data in Matlab☆46Jul 24, 2026Updated last month
- Multimodal Surface Matching with Higher order Clique Reduction: Mac OS and Linux binaries☆44Jul 21, 2022Updated 4 years ago
- ciftiTools R package☆59Aug 24, 2026Updated last week
- The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets☆134Nov 8, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)☆164Aug 25, 2026Updated last week
- A package for publication-ready brain surface figures☆76Nov 18, 2025Updated 9 months ago
- LST-AI - Deep Learning Ensemble for Accurate MS Lesion Segmentation☆52Aug 20, 2026Updated last week
- The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface …☆185Jan 15, 2026Updated 7 months ago
- Code and documentation supporting Markello & Misic, 2021, "Comparing spatial null models for brain maps" (NeuroImage)☆25Apr 25, 2021Updated 5 years ago
- A repository for the Quantitative Imaging Toolkit (QIT)☆27Apr 21, 2026Updated 4 months ago
- PET2BIDS helps you convert your PET data into BIDS! raw PET scanner files (e.g. ecat, dicom) and additional side files like .e.g excel sh…☆33Aug 25, 2026Updated last week
- matplotlib mesh surface plotter☆30Jul 25, 2025Updated last year
- Python scripts for shape analysis of neuroimaging data (wrapping around shapeDNA and FreeSurfer)☆21Feb 3, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- REACT: Receptor-Enriched Analysis of functional Connectivity by Targets☆26Aug 23, 2023Updated 3 years ago
- Browser-based version of FreeView, built on top of niivue☆24Jun 19, 2026Updated 2 months ago
- Python utilities for medical image and surface-based analysis☆40Aug 18, 2026Updated 2 weeks ago
- Core tools for Cocoan Lab☆25Jan 29, 2026Updated 7 months ago
- DL+DiReCT - Direct Cortical Thickness Estimation using Deep Learning-based Anatomy Segmentation and Cortex Parcellation☆34Apr 16, 2025Updated last year
- MAGIC: Multi-scAle heteroGeneity analysIs and Clustering☆14Jun 17, 2024Updated 2 years ago
- An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images☆54Feb 11, 2026Updated 6 months ago