Deep-MI / FastSurfer
PyTorch implementation of FastSurferCNN
☆490Updated this week
Alternatives and similar repositories for FastSurfer:
Users that are interested in FastSurfer are comparing it to the libraries listed below
- Contrast-agnostic segmentation of MRI scans☆416Updated 7 months ago
- Automatic White Matter Bundle Segmentation☆234Updated last year
- Software platform for clinical neuroimaging studies☆239Updated this week
- MRI brain extraction tool☆317Updated 2 months ago
- Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain☆312Updated 3 weeks ago
- Python package to access a cacophony of neuro-imaging file formats☆681Updated 2 weeks ago
- Neuroimaging analysis and visualization suite☆645Updated this week
- Pre-trained models and utilities for deep learning on medical images in Python☆211Updated last week
- Processing pipelines for the HCP☆559Updated this week
- ☆354Updated 2 months ago
- Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)☆137Updated last week
- A fast medical imaging analysis library in Python with algorithms for registration, segmentation, and more.☆681Updated this week
- Deep Learning tools for brain medical images☆137Updated 7 months ago
- MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), …☆302Updated last week
- A framework for developing neural network models for 3D image processing.☆159Updated 2 weeks ago
- dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC☆933Updated this week
- Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure☆172Updated last month
- Flexible DICOM conversion into structured directory layouts☆246Updated last week
- Framework for the reproducible processing of neuroimaging data with deep learning methods☆167Updated last week
- A framework for joint super-resolution and image synthesis, without requiring real training data☆155Updated 11 months ago
- fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual interv…☆652Updated this week
- Harmonization of multi-site imaging data with ComBat☆279Updated last year
- Brain Imaging Data Structure (BIDS) Specification☆302Updated this week
- Deep Whole Brain Segmentation Using SLANT Method☆116Updated last year
- Preprocessing pipeline on Brain MR Images through FSL and ANTs, including registration, skull-stripping, bias field correction, enhanceme…☆201Updated 6 years ago
- normalize the intensities of various MR image modalities☆323Updated last month
- Preprocessing of diffusion MRI☆150Updated this week
- A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.☆187Updated last week
- BIDScoin converts your source-level neuroimaging data to BIDS☆136Updated this week
- Workflows and interfaces for neuroimaging packages☆764Updated this week