PyTorch implementation of FastSurferCNN
☆626Aug 6, 2026Updated this week
Alternatives and similar repositories for FastSurfer
Users that are interested in FastSurfer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data☆82Jul 31, 2026Updated last week
- Neuroimaging analysis and visualization suite☆866Updated this week
- Contrast-agnostic segmentation of MRI scans☆566Jul 17, 2024Updated 2 years ago
- dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…☆77Feb 14, 2026Updated 5 months ago
- Automatic White Matter Bundle Segmentation☆265Feb 23, 2026Updated 5 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A framework for joint super-resolution and image synthesis, without requiring real training data☆194Mar 29, 2024Updated 2 years ago
- ☆154Jul 5, 2025Updated last year
- micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read…☆120Jul 2, 2026Updated last month
- ☆750Aug 4, 2026Updated last week
- Preprocessing of diffusion MRI☆186Updated this week
- Advanced Normalization Tools (ANTs)☆1,495Updated this week
- Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data☆78Mar 17, 2021Updated 5 years ago
- Deep Whole Brain Segmentation Using SLANT Method☆130May 1, 2026Updated 3 months ago
- Processing pipelines for the HCP☆650Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A toolbox for comparing brain maps☆338Jun 13, 2026Updated last month
- The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface …☆186Jan 15, 2026Updated 6 months ago
- BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics data…☆251Jun 9, 2026Updated 2 months ago
- AssemblyNet: 3D Whole Brain MRI segmentation pipeline☆73Jun 28, 2023Updated 3 years ago
- Pre-trained models and utilities for deep learning on medical images in Python (Keras/TensorFlow)☆259Updated this week
- ☆222Jun 23, 2023Updated 3 years ago
- dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC☆1,178Jul 25, 2026Updated 2 weeks ago
- Software platform for clinical neuroimaging studies☆287Aug 3, 2026Updated last week
- MRI brain extraction tool☆430Dec 18, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Neuro Lesion Inpainting Tool (neuroLIT / FastSurfer-LIT) for lesion inpainting e.g. for whole brain segmentation and cortical surface rec…☆22May 12, 2026Updated 2 months ago
- R library for structural neuroimaging. Provides high-level functions to access (read and write) and visualize surface-based brain morphom…☆77Updated this week
- Python tools for querying and manipulating BIDS datasets.☆262Updated this week
- The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets☆134Nov 8, 2022Updated 3 years ago
- A fast medical imaging analysis library in Python with algorithms for registration, segmentation, and more.☆881Jul 26, 2026Updated 2 weeks ago
- Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain☆369Jul 20, 2026Updated 3 weeks ago
- ☆12Oct 24, 2025Updated 9 months ago
- fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual interv…☆744Aug 3, 2026Updated last week
- Flexible DICOM conversion into structured directory layouts☆283Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A workflow to allow Freesurfer recon-all to run on brain image with gliomas☆32Aug 2, 2026Updated last week
- Generate custom Docker and Singularity images, and minimize existing containers☆359Jul 1, 2026Updated last month
- rapidtide - a suite of programs for doing time lag correlation analysis on fMRI data☆97Updated this week
- A package for publication-ready brain surface figures☆76Nov 18, 2025Updated 8 months ago
- Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)☆165Updated this week
- Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure☆204Updated this week
- TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity☆63Sep 23, 2024Updated last year