Alternatives and similar repositories for FastSurfer

Users that are interested in FastSurfer are comparing it to the libraries listed below

• ANTsX / ANTsPyNet
  Pre-trained models and utilities for deep learning on medical images in Python (Keras/TensorFlow)
  ☆247Updated this week
• BBillot / SynthSeg
  Contrast-agnostic segmentation of MRI scans
  ☆529Updated last year
• aramis-lab / clinica
  Software platform for clinical neuroimaging studies
  ☆267Updated last week
• ANTsX / ANTsPy
  A fast medical imaging analysis library in Python with algorithms for registration, segmentation, and more.
  ☆827Updated last week
• MIC-DKFZ / TractSeg
  Automatic White Matter Bundle Segmentation
  ☆253Updated 2 years ago
• nipreps / mriqc
  Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
  ☆345Updated last week
• BBillot / SynthSR
  A framework for joint super-resolution and image synthesis, without requiring real training data
  ☆180Updated last year
• icometrix / dicom2nifti
  ☆390Updated 7 months ago
• MIC-DKFZ / HD-BET
  MRI brain extraction tool
  ☆395Updated last year
• freesurfer / freesurfer
  Neuroimaging analysis and visualization suite
  ☆781Updated this week
• nipreps / smriprep
  Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
  ☆162Updated last week
• neuronets / nobrainer
  A framework for developing neural network models for 3D image processing.
  ☆167Updated 2 weeks ago
• nipy / nibabel
  Python package to access a cacophony of neuro-imaging file formats
  ☆759Updated this week
• iitzco / deepbrain
  Deep Learning tools for brain medical images
  ☆142Updated last year
• Washington-University / HCPpipelines
  Processing pipelines for the HCP
  ☆631Updated this week
• aramis-lab / clinicadl
  Framework for the reproducible processing of neuroimaging data with deep learning methods
  ☆177Updated last week
• miykael / gif_your_nifti
  How to create fancy GIFs from an MRI brain image
  ☆125Updated last year
• rordenlab / dcm2niix
  dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC
  ☆1,103Updated 3 months ago
• CCI-Bonn / HD-BET
  Automated deep-learning based brain extraction applicable to a broad range of MRI sequence types and with robust performance even in the …
  ☆39Updated 4 years ago
• volBrain / AssemblyNet
  AssemblyNet: 3D Whole Brain MRI segmentation pipeline
  ☆69Updated 2 years ago
• Jfortin1 / ComBatHarmonization
  Harmonization of multi-site imaging data with ComBat
  ☆319Updated 2 years ago
• MRtrix3 / mrtrix3
  MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), …
  ☆336Updated this week
• sergivalverde / nicMSlesions
  Easy multiple sclerosis white matter lesion segmentation using convolutional deep neural networks.
  ☆50Updated 2 years ago
• NrgXnat / oasis-scripts
  Example download scripts for the OASIS3 project
  ☆169Updated 4 months ago
• SlicerDMRI / whitematteranalysis
  White matter tractography clustering and more...
  ☆80Updated 7 months ago
• vanandrew / brainextractor
  Brain Extraction Tool in Python
  ☆43Updated 10 months ago
• Angeluz-07 / MRI-preprocessing-techniques
  Code examples of the free course in Youtube of brain MRI preprocessing techniques in python
  ☆75Updated last year
• QTIM-Lab / DeepNeuro
  A deep learning python package for neuroimaging data. Made by:
  ☆129Updated 5 years ago
• WCHN / CTseg
  Brain CT image segmentation, normalisation, skull-stripping and total brain/intracranial volume computation.
  ☆84Updated last month
• jcreinhold / intensity-normalization
  Normalize MR image intensities in Python
  ☆339Updated 6 months ago