Generate subject connectomes from raw BIDS data & perform inter-subject connection density normalisation, using the MRtrix3 software package.
☆54Mar 18, 2026Updated 3 weeks ago
Alternatives and similar repositories for MRtrix3_connectome
Users that are interested in MRtrix3_connectome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Empirical processing pipeline for The Virtual Brain☆24Mar 26, 2019Updated 7 years ago
- Real-time tractogram computer and visualizer☆16Dec 21, 2022Updated 3 years ago
- multi atlas transfer tools for neuroimaging (maTT)☆68Nov 18, 2024Updated last year
- Handling of structural neuroimaging file formats for Julia.☆13Feb 18, 2026Updated last month
- Automated Fiber Quantification☆77Mar 6, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps☆88Jul 31, 2025Updated 8 months ago
- Preprocessing of diffusion MRI☆179Updated this week
- Convert tractography studies from mrtrix into dicom for use in navigation software☆17Mar 1, 2025Updated last year
- dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…☆73Feb 14, 2026Updated 2 months ago
- MRtrix scripts to generate dense weighted structural connectomes from the Human Connectome Project "minimally pre-processed" diffusion MR…☆22Dec 23, 2022Updated 3 years ago
- MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), …☆345Updated this week
- A repository for the Quantitative Imaging Toolkit (QIT)☆25Mar 11, 2026Updated last month
- A command line tool for quantification of perfusion from ASL data☆13Jul 13, 2023Updated 2 years ago
- Processing pipelines for the HCP☆639Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Bootstrapped Analysis of Stable Clusters- A semi-automated fMRI individual and group level functional parcellation technique☆26Oct 11, 2019Updated 6 years ago
- Flexible DICOM conversion into structured directory layouts☆276Mar 30, 2026Updated 2 weeks ago
- Please visit our new location: https://github.com/tractometry/pyAFQ☆60Oct 10, 2024Updated last year
- Dipy pipeline for reconstruction and tracking of tractography from Human Connectome Project dataset☆11Nov 18, 2015Updated 10 years ago
- Tool for downloading ABCD_BIDS inputs and derivatives from the ABCD-BIDS NDA Collection 3165.☆24Aug 13, 2024Updated last year
- Fragments FreeSurfer parcellation annotation in N-equal sized parcels☆29Aug 13, 2020Updated 5 years ago
- Tools for creating full TVB models from individual anatomical scans☆35Feb 19, 2021Updated 5 years ago
- ☆729Mar 25, 2026Updated 3 weeks ago
- Maps gene samples into surface parcellation☆19Dec 20, 2017Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- rapidtide - a suite of programs for doing time lag correlation analysis on fMRI data☆94Updated this week
- ☆18Nov 26, 2025Updated 4 months ago
- ☆148Jul 5, 2025Updated 9 months ago
- Connectome Mapper☆39Jan 5, 2022Updated 4 years ago
- ☆216Jun 23, 2023Updated 2 years ago
- Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing p…☆83Mar 20, 2026Updated 3 weeks ago
- Tutorial papers and dataset illustrating group connectivity analysis with DCM and PEB☆52Jul 1, 2024Updated last year
- TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity☆63Sep 23, 2024Updated last year
- A toolbox for comparing brain maps☆320Apr 23, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- MATLAB code for reading and writing CIFTI connectivity files☆69Feb 25, 2026Updated last month
- Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline Version 2☆32Mar 23, 2026Updated 3 weeks ago
- R library for structural neuroimaging. Provides high-level functions to access (read and write) and visualize surface-based brain morphom…☆75Feb 18, 2026Updated last month
- generate connectome from fMRIPrep outputs☆12Apr 7, 2026Updated last week
- Easy creation of Lausanne2008 atlases☆23May 28, 2020Updated 5 years ago
- Subject-wise networks from structural MRI, both vertex- and voxel-wise features (thickness, GM density, curvature, gyrification)☆38Apr 4, 2026Updated last week
- Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain☆351Jan 28, 2026Updated 2 months ago