bids-apps / MRtrix3_connectomeView external linksLinks
Generate subject connectomes from raw BIDS data & perform inter-subject connection density normalisation, using the MRtrix3 software package.
☆54Jan 6, 2026Updated last month
Alternatives and similar repositories for MRtrix3_connectome
Users that are interested in MRtrix3_connectome are comparing it to the libraries listed below
Sorting:
- Real-time tractogram computer and visualizer☆16Dec 21, 2022Updated 3 years ago
- Empirical processing pipeline for The Virtual Brain☆24Mar 26, 2019Updated 6 years ago
- Bootstrapped Analysis of Stable Clusters- A semi-automated fMRI individual and group level functional parcellation technique☆26Oct 11, 2019Updated 6 years ago
- A command line tool for quantification of perfusion from ASL data☆12Jul 13, 2023Updated 2 years ago
- MRtrix scripts to generate dense weighted structural connectomes from the Human Connectome Project "minimally pre-processed" diffusion MR…☆22Dec 23, 2022Updated 3 years ago
- multi atlas transfer tools for neuroimaging (maTT)☆68Nov 18, 2024Updated last year
- Dipy pipeline for reconstruction and tracking of tractography from Human Connectome Project dataset☆12Nov 18, 2015Updated 10 years ago
- Tool for downloading ABCD_BIDS inputs and derivatives from the ABCD-BIDS NDA Collection 3165.☆24Aug 13, 2024Updated last year
- Preprocessing of diffusion MRI☆177Jan 16, 2026Updated 3 weeks ago
- MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), …☆336Feb 5, 2026Updated last week
- Handling of structural neuroimaging file formats for Julia.☆13Nov 18, 2024Updated last year
- Processing pipelines for the HCP☆631Updated this week
- Tools for creating full TVB models from individual anatomical scans☆35Feb 19, 2021Updated 4 years ago
- Automated Fiber Quantification☆77Mar 6, 2024Updated last year
- Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps☆84Jul 31, 2025Updated 6 months ago
- A repository for the Quantitative Imaging Toolkit (QIT)☆25Dec 7, 2025Updated 2 months ago
- Convert tractography studies from mrtrix into dicom for use in navigation software☆17Mar 1, 2025Updated 11 months ago
- Flexible DICOM conversion into structured directory layouts☆273Jan 22, 2026Updated 3 weeks ago
- Connectome Mapper☆39Jan 5, 2022Updated 4 years ago
- This toolbox includes MATLAB scripts to perform a "spin test" of anatomical correspondence between cortical surface maps, as presented in…☆57Aug 25, 2020Updated 5 years ago
- Biophysical interpretable neural network.☆15May 7, 2018Updated 7 years ago
- ☆144Jul 5, 2025Updated 7 months ago
- That’s what I do: I drink and I know things.☆13Sep 24, 2019Updated 6 years ago
- GNU Octave library for connectivity analysis in large fMRI datasets☆30Oct 11, 2022Updated 3 years ago
- TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity☆63Sep 23, 2024Updated last year
- Causal Dynamic Network Modeling☆14Feb 21, 2019Updated 6 years ago
- Official public repository for the XCP Engine. This tool is deprecated in favor of XCP-D and ASLPrep.☆65Apr 19, 2023Updated 2 years ago
- Please visit our new location: https://github.com/tractometry/pyAFQ☆60Oct 10, 2024Updated last year
- MATLAB code for reading and writing CIFTI connectivity files☆69Oct 19, 2024Updated last year
- MNI2FS: Surface Rendering of MNI Space Volumes for MATLAB☆18Sep 3, 2021Updated 4 years ago
- A reimplementation of MAGeTbrain using only ANTs tools.☆17Jan 5, 2023Updated 3 years ago
- Neuroimgaing data processing pipelines used in the lab☆21Jul 23, 2019Updated 6 years ago
- R library for structural neuroimaging. Provides high-level functions to access (read and write) and visualize surface-based brain morphom…☆73Sep 9, 2025Updated 5 months ago
- ☆712Sep 19, 2025Updated 4 months ago
- PCA Model for Brain Extraction☆18Jan 2, 2019Updated 7 years ago
- Maps gene samples into surface parcellation☆19Dec 20, 2017Updated 8 years ago
- (Stereotatic ElectroEncephalography Kit) Run reconstruction, co-registration, electrode localization and surface/atlas rendering for iEEG…☆19Sep 8, 2021Updated 4 years ago
- Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing p…☆82May 6, 2025Updated 9 months ago
- An integrated framework for DWI Image QC and processing☆13Oct 22, 2025Updated 3 months ago