Please visit our new location: https://github.com/tractometry/pyAFQ
☆60Oct 10, 2024Updated last year
Alternatives and similar repositories for pyAFQ
Users that are interested in pyAFQ are comparing it to the libraries listed below
Sorting:
- Automated Fiber Quantification☆77Mar 6, 2024Updated 2 years ago
- ☆15Feb 23, 2026Updated last week
- Automatic White Matter Bundle Segmentation☆254Feb 23, 2026Updated last week
- Preprocessing of diffusion MRI☆178Feb 19, 2026Updated 2 weeks ago
- WM tract atlases for the human (HCP and UK Biobank) and Macaque brain and connectivity blueprint atlases for the human (HCP) and macaque …☆18Dec 23, 2021Updated 4 years ago
- Browser-based visualization tools for AFQ results☆33Aug 20, 2024Updated last year
- VISTASOFT is the main software repository of the VISTA lab at Stanford University.☆153Jan 7, 2026Updated last month
- The open source toolbox for reproducible diffusion MRI-based microstructure estimation☆118Dec 4, 2024Updated last year
- GNU R package for reading and writing neuroimaging file formats. Not limited to FreeSurfer anymore, despite its name.☆23Feb 18, 2026Updated 2 weeks ago
- Configurable Pipeline for the Analysis of Connectomes☆79Oct 31, 2025Updated 4 months ago
- MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), …☆340Feb 27, 2026Updated last week
- Real-time tractogram computer and visualizer☆16Dec 21, 2022Updated 3 years ago
- A Tractography Tool for Diffusion MRI☆153Feb 26, 2026Updated last week
- ☆47Oct 26, 2025Updated 4 months ago
- R library for structural neuroimaging. Provides high-level functions to access (read and write) and visualize surface-based brain morphom…☆73Feb 18, 2026Updated 2 weeks ago
- Dipy pipeline for reconstruction and tracking of tractography from Human Connectome Project dataset☆11Nov 18, 2015Updated 10 years ago
- rsHRF: A Toolbox for Resting State HRF Deconvolution and Connectivity Analysis (MATLAB)☆54Sep 15, 2025Updated 5 months ago
- Plotting 4 brain surface views on a single matplotlib figure☆12Dec 3, 2021Updated 4 years ago
- R package to implement template ICA☆11May 20, 2025Updated 9 months ago
- Beginner's guide for Nipype☆37Feb 7, 2023Updated 3 years ago
- Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps☆85Jul 31, 2025Updated 7 months ago
- dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…☆73Feb 14, 2026Updated 2 weeks ago
- For calculating exact geodesic distances on cortical surface meshes☆53Aug 14, 2024Updated last year
- Generate subject connectomes from raw BIDS data & perform inter-subject connection density normalisation, using the MRtrix3 software pac…☆54Updated this week
- An extended Human Connectome Project multimodal parcellation atlas of the human cortex and subcortical areas☆42Sep 24, 2024Updated last year
- Displays regional stats on Freesurfer surfaces in MATLAB☆16Sep 18, 2020Updated 5 years ago
- Neuro Lesion Inpainting Tool (neuroLIT / FastSurfer-LIT) for lesion inpainting e.g. for whole brain segmentation and cortical surface rec…☆18Feb 21, 2026Updated last week
- The dHCP deep learning-based neonatal structural MRI processing pipeline.☆19Oct 17, 2024Updated last year
- PETPVE12: an SPM toolbox for Partial Volume Effects correction of PET images☆17Aug 18, 2021Updated 4 years ago
- ☆213Jun 23, 2023Updated 2 years ago
- A few routines to perform "auto reorient" in SPM☆17Jan 11, 2023Updated 3 years ago
- Subdivides the surface-based Desikan-Killiany atlas into equally sized regions. Please cite: Romero-Garcia R, Atienza M, Clemmensen LH, C…☆20Oct 28, 2025Updated 4 months ago
- Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain☆350Jan 28, 2026Updated last month
- Handy scripts for SPM☆77Sep 24, 2020Updated 5 years ago
- Bash script to compute DTI-ALPS☆72Sep 12, 2025Updated 5 months ago
- BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics data…☆243Feb 9, 2026Updated 3 weeks ago
- A prediction-based extension of network-based statistics.☆36Jan 2, 2026Updated 2 months ago
- Code for paper Heritability and interindividual variability of regional structure-function coupling.☆23Jan 19, 2023Updated 3 years ago
- Reusable neuroimaging pipelines using nipype☆17May 28, 2019Updated 6 years ago