Alternatives and similar repositories for pyAFQ:

Users that are interested in pyAFQ are comparing it to the libraries listed below

• yeatmanlab / AFQ
  Automated Fiber Quantification
  ☆76Updated 10 months ago
• NYU-DiffusionMRI / DESIGNER-v1
  Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline
  ☆51Updated 10 months ago
• ExploreASL / ExploreASL
  ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…
  ☆48Updated this week
• MASILab / PreQual
  An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images
  ☆45Updated 5 months ago
• hMRI-group / hMRI-toolbox
  A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
  ☆62Updated this week
• srikash / presurfer
  Scripts to prepare MP2RAGE for Freesurfer
  ☆24Updated last year
• PennLINC / qsiprep
  Preprocessing of diffusion MRI
  ☆142Updated this week
• PennLINC / aslprep
  Preprocessing of arterial spin labeling (ASL) data
  ☆44Updated this week
• rordenlab / niimath
  niimath - a clone of fslmaths. Try the live demo:
  ☆57Updated 3 weeks ago
• scilus / scilpy
  The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox
  ☆63Updated this week
• AthenaEPI / dmipy
  The open source toolbox for reproducible diffusion MRI-based microstructure estimation
  ☆99Updated last month
• gbarisano / alps
  Bash script to compute DTI-ALPS
  ☆39Updated last month
• nighres / nighres
  Processing tools for high-resolution neuroimaging
  ☆65Updated last month
• xiangruili / dicm2nii
  DICOM to NIfTI conversion, NIfTI tools
  ☆93Updated 4 months ago
• sameerd / DiffusionTensorImaging
  Single Shell Free Water Elimination Model for Diffusion Tensor Imaging
  ☆22Updated last year
• mezera / mrQ
  mrQ_BoxJoinBox
  ☆22Updated last year
• Washington-University / gradunwarp
  Gradient Unwarping in Python
  ☆34Updated 3 weeks ago
• bids-apps / freesurfer
  BIDS app wrapping recon-all from FreeSurfer
  ☆42Updated 2 months ago
• nipreps / dmriprep
  dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…
  ☆65Updated last year
• pnlbwh / dMRIharmonization
  Multi-site dMRI harmonization
  ☆46Updated last week
• openneuropet / PET2BIDS
  PET2BIDS helps you convert your PET data into BIDS! raw PET scanner files (e.g. ecat, dicom) and additional side files like .e.g excel sh…
  ☆27Updated 3 weeks ago
• nipreps / niworkflows
  Common workflows for MRI (anatomical, functional, diffusion, etc)
  ☆91Updated this week
• Deep-MI / fsqc
  A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data
  ☆60Updated 2 months ago
• daducci / AMICO
  Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data
  ☆106Updated 6 months ago
• HumanBrainED / NHP-BrainExtraction
  ☆34Updated 2 years ago
• MASILab / Synb0-DISCO
  Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps
  ☆64Updated 5 months ago
• ekaden / smt
  Microscopic diffusion anisotropy imaging made easy!
  ☆23Updated 6 years ago
• SlicerDMRI / whitematteranalysis
  White matter tractography clustering and more...
  ☆71Updated last week
• ecr05 / MSM_HOCR
  Multimodal Surface Matching with Higher order Clique Reduction: Mac OS and Linux binaries
  ☆37Updated 2 years ago
• markus-nilsson / md-dmri
  MATLAB code for Multidimensional Diffusion MRI
  ☆45Updated last month