Alternatives and similar repositories for mriqc

Users that are interested in mriqc are comparing it to the libraries listed below

• nipy / heudiconv
  Flexible DICOM conversion into structured directory layouts
  ☆274Updated this week
• UNFmontreal / Dcm2Bids
  Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure
  ☆190Updated last week
• nipreps / smriprep
  Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
  ☆162Updated this week
• PennLINC / qsiprep
  Preprocessing of diffusion MRI
  ☆171Updated last month
• afni / afni
  Official AFNI source and documentation
  ☆183Updated this week
• nipreps / niworkflows
  Common workflows for MRI (anatomical, functional, diffusion, etc)
  ☆107Updated last week
• Washington-University / gradunwarp
  Gradient Unwarping in Python
  ☆39Updated last year
• nipreps / dmriprep
  dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…
  ☆73Updated 2 months ago
• bids-standard / bids-examples
  A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.
  ☆207Updated this week
• yeatmanlab / AFQ
  Automated Fiber Quantification
  ☆77Updated last year
• MRtrix3 / mrtrix3
  MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), …
  ☆334Updated last week
• MIC-DKFZ / TractSeg
  Automatic White Matter Bundle Segmentation
  ☆250Updated 2 years ago
• neurospin / pypreprocess
  Preprocessing scripts for neuro imaging
  ☆110Updated 2 years ago
• cMadan / openMorph
  Curated list of open-access databases with human structural MRI data
  ☆129Updated 6 years ago
• Washington-University / HCPpipelines
  Processing pipelines for the HCP
  ☆622Updated last week
• jmtyszka / bidskit
  Utility functions for working with DICOM and BIDS neuroimaging data
  ☆64Updated 2 months ago
• poldracklab / pydeface
  defacing utility for MRI images
  ☆131Updated 2 years ago
• xiangruili / dicm2nii
  DICOM to NIfTI conversion, NIfTI tools
  ☆103Updated last month
• daducci / AMICO
  Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data
  ☆122Updated last month
• Deep-MI / fsqc
  A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data
  ☆73Updated last month
• Donders-Institute / bidscoin
  BIDScoin converts your source-level neuroimaging data to BIDS
  ☆150Updated last month
• MASILab / PreQual
  An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images
  ☆53Updated last year
• templateflow / templateflow
  The TemplateFlow Archive - A DataLad super-dataset
  ☆93Updated last week
• SlicerDMRI / whitematteranalysis
  White matter tractography clustering and more...
  ☆80Updated 7 months ago
• scilus / scilpy
  The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox
  ☆93Updated last week
• layerfMRI / LAYNII
  Stand alone fMRI software suite for layer-fMRI analyses.
  ☆105Updated 2 months ago
• rordenlab / niimath
  niimath - a clone of fslmaths. Try the live demo:
  ☆71Updated 2 months ago
• MASILab / Synb0-DISCO
  Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps
  ☆82Updated 5 months ago
• ecr05 / MSM_HOCR
  Multimodal Surface Matching with Higher order Clique Reduction: Mac OS and Linux binaries
  ☆42Updated 3 years ago
• nighres / nighres
  Processing tools for high-resolution neuroimaging
  ☆73Updated last month