Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
☆165Aug 10, 2026Updated this week
Alternatives and similar repositories for smriprep
Users that are interested in smriprep are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…☆77Feb 14, 2026Updated 5 months ago
- Common workflows for MRI (anatomical, functional, diffusion, etc)☆116Updated this week
- Preprocessing of diffusion MRI☆186Updated this week
- fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual interv…☆744Updated this week
- Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain☆369Jul 20, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Preprocessing of arterial spin labeling (ASL) data☆63Aug 4, 2026Updated last week
- Flexible DICOM conversion into structured directory layouts☆283Updated this week
- Surface version of the M-CRIB atlases.☆14Jun 2, 2026Updated 2 months ago
- Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes☆45Updated this week
- Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure☆204Updated this week
- BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics data…☆251Jun 9, 2026Updated 2 months ago
- Code and documentation supporting Markello & Misic, 2021, "Comparing spatial null models for brain maps" (NeuroImage)☆25Apr 25, 2021Updated 5 years ago
- Post-processing of fMRIPrep, NiBabies, and HCP outputs☆117Updated this week
- BIDS app wrapping recon-all from FreeSurfer☆46Jul 24, 2026Updated 2 weeks ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read…☆120Updated this week
- Processing pipelines for the HCP☆650Updated this week
- Neuroimaging analysis and visualization suite☆867Updated this week
- Workflows and interfaces for neuroimaging packages☆834Jul 20, 2026Updated 3 weeks ago
- ☆11Apr 6, 2026Updated 4 months ago
- The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets☆134Nov 8, 2022Updated 3 years ago
- fMRIPrep Lifespan - A robust, transparent workflow tailored for neonate and infant MRI☆39Jul 31, 2026Updated last week
- A suite of brain PET processing pipelines☆14Jan 6, 2025Updated last year
- Pre-trained models and utilities for deep learning on medical images in Python (Keras/TensorFlow)☆260Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface …☆186Jan 15, 2026Updated 6 months ago
- Brain Imaging Data Structure (BIDS) Specification☆367Updated this week
- BrainPainter - Brain Visualisation Software☆74Feb 28, 2023Updated 3 years ago
- Combined cortical/subcortical atlases for xcp-d and qsiprep☆31Aug 28, 2024Updated last year
- Displays regional stats on Freesurfer surfaces in MATLAB☆16Sep 18, 2020Updated 5 years ago
- Multimodal Surface Matching with Higher order Clique Reduction: Mac OS and Linux binaries☆44Jul 21, 2022Updated 4 years ago
- Network Modification Tool☆20Jul 23, 2026Updated 3 weeks ago
- BIDScoin converts your source-level neuroimaging data to BIDS☆159Jul 2, 2026Updated last month
- Software platform for clinical neuroimaging studies☆287Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- niimath - a clone of fslmaths. Try the live demo:☆86Aug 2, 2026Updated last week
- Python tools for querying and manipulating BIDS datasets.☆263Aug 4, 2026Updated last week
- ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data☆128Updated this week
- Generate custom Docker and Singularity images, and minimize existing containers☆359Updated this week
- A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data☆82Jul 31, 2026Updated last week
- Pipeline for Analysing Lesions after Stroke (PALS) is a scalable and user-friendly toolbox designed to facilitate standardised analysis a…☆27Apr 4, 2025Updated last year
- REACT: Receptor-Enriched Analysis of functional Connectivity by Targets☆26Aug 23, 2023Updated 2 years ago