Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data
☆78Mar 17, 2021Updated 5 years ago
Alternatives and similar repositories for QC
Users that are interested in QC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data☆79Mar 18, 2026Updated 2 months ago
- VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.☆76Dec 27, 2025Updated 4 months ago
- Python scripts for shape analysis of neuroimaging data (wrapping around shapeDNA and FreeSurfer)☆21Feb 3, 2021Updated 5 years ago
- The Brain Predictability toolbox (BPt), is a python based Machine Learning library designed primarily for tabular and neuroimaging specif…☆11Dec 14, 2022Updated 3 years ago
- Displays regional stats on Freesurfer surfaces in MATLAB☆16Sep 18, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…☆74Feb 14, 2026Updated 3 months ago
- Knowing what you know - Bayesian brain parcellation☆21Sep 3, 2022Updated 3 years ago
- Scripts for MRI preprocessing☆10Oct 11, 2020Updated 5 years ago
- Ironsmith is a comprehensive, fully automated pipeline for creating and processing Quantitative Susceptibility Maps (QSM), extracting QSM…☆25Dec 11, 2023Updated 2 years ago
- Scripts for comparing different fmriprep denoising approaches on quality control functional connectivity (QC-FC) motion, QC-FC distance-d…☆15Oct 20, 2021Updated 4 years ago
- Pipelines and tools for MRI analysis☆12Jun 14, 2023Updated 2 years ago
- Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain☆360Jan 28, 2026Updated 3 months ago
- A repository for notebooks associated with FMRIPREP☆17Oct 25, 2018Updated 7 years ago
- Harmonization tools for multi-site neuroimaging analysis. Implemented as a python package. Harmonization of MRI, sMRI, dMRI, fMRI variabl…☆121May 18, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Subject-wise networks from structural MRI, both vertex- and voxel-wise features (thickness, GM density, curvature, gyrification)☆38Apr 4, 2026Updated last month
- A few routines to perform "auto reorient" in SPM☆17Jan 11, 2023Updated 3 years ago
- Handy scripts for SPM☆77Sep 24, 2020Updated 5 years ago
- A toolbox for ensemble-based multimodal gene-category enrichment analysis of human neuroimaging data. DEPRICATED! Succeeded by "NiSpace"☆20May 30, 2025Updated 11 months ago
- Tool to convert raw MRI datasets to BIDS-compatible datasets☆35Mar 28, 2022Updated 4 years ago
- Automated Preprocessing Pipeline for Fetal Resting-State fMRI Data☆16Mar 24, 2023Updated 3 years ago
- ☆218Jun 23, 2023Updated 2 years ago
- ☆20Sep 30, 2025Updated 7 months ago
- CIVET Installer☆31Jan 29, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- PyTorch implementation of FastSurferCNN☆603Updated this week
- JuSpyce - a toolbox for assessment of spatial associations between brain maps. DEPRICATED! Succeeded by "NiSpace"☆11May 26, 2025Updated last year
- developmental cortical propagation detection + analyses☆10Jan 16, 2023Updated 3 years ago
- These protocols are for the analysis of subcortical volume, and cortical thickness and surface area data within FreeSurfer ROI's for ENIG…☆24Mar 3, 2026Updated 2 months ago
- R library for structural neuroimaging. Provides high-level functions to access (read and write) and visualize surface-based brain morphom…☆76Apr 12, 2026Updated last month
- A toolbox for comparing brain maps☆320Apr 23, 2025Updated last year
- Data and code supporting Hansen et al., 2022, Nature Communications, "Local molecular and global connectomic contributions to cross-disor…☆25Sep 22, 2022Updated 3 years ago
- fit response shapes from signal time-courses☆12May 8, 2026Updated 2 weeks ago
- Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure☆198Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ciftiTools R package☆58May 19, 2026Updated last week
- The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface …☆179Jan 15, 2026Updated 4 months ago
- Neuroimaging Data Model (NIDM): describing neuroimaging data and provenance☆33Mar 22, 2023Updated 3 years ago
- The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets☆132Nov 8, 2022Updated 3 years ago
- This repository contains a Python implementation of Morphometric INverse Divergence (MIND) calculation for the estimation of structural s…☆54Apr 17, 2024Updated 2 years ago
- BIDS app wrapping recon-all from FreeSurfer☆45Mar 16, 2026Updated 2 months ago
- GNU R package for reading and writing neuroimaging file formats. Not limited to FreeSurfer anymore, despite its name.☆23Feb 18, 2026Updated 3 months ago