fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
☆737Jun 1, 2026Updated last week
Alternatives and similar repositories for fmriprep
Users that are interested in fmriprep are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain☆365Jan 28, 2026Updated 4 months ago
- Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)☆166Jun 1, 2026Updated last week
- Workflows and interfaces for neuroimaging packages☆826Updated this week
- Flexible DICOM conversion into structured directory layouts☆280Updated this week
- Processing pipelines for the HCP☆648Jun 5, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Python tools for querying and manipulating BIDS datasets.☆259Updated this week
- Brain Imaging Data Structure (BIDS) Specification☆358Jun 5, 2026Updated last week
- Machine learning for NeuroImaging in Python☆1,403Updated this week
- Fit Linear Models to BIDS Datasets☆81Mar 9, 2026Updated 3 months ago
- Common workflows for MRI (anatomical, functional, diffusion, etc)☆115Jun 1, 2026Updated last week
- Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure☆200Updated this week
- dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…☆76Feb 14, 2026Updated 4 months ago
- The TemplateFlow Archive - A DataLad super-dataset☆98Mar 17, 2026Updated 2 months ago
- The Starter-kit has moved to the new BIDS website.☆277Feb 21, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Brain Imaging Analysis Kit☆372Jun 3, 2026Updated last week
- fmriflows is a consortium of many (dependent) fMRI analysis pipelines, including anatomical and functional pre-processing, univariate 1st…☆72Jun 7, 2022Updated 4 years ago
- dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC☆1,162Updated this week
- Preprocessing of diffusion MRI☆183Updated this week
- ☆746Mar 25, 2026Updated 2 months ago
- Validator for the Brain Imaging Data Structure☆185Dec 11, 2025Updated 6 months ago
- Generate custom Docker and Singularity images, and minimize existing containers☆357May 1, 2026Updated last month
- Neuroimaging analysis and visualization suite☆847Updated this week
- Pycortex is a python-based toolkit for surface visualization of fMRI data☆662Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A toolbox for comparing brain maps☆323Jun 4, 2026Updated last week
- Configurable Pipeline for the Analysis of Connectomes☆81Oct 31, 2025Updated 7 months ago
- A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.☆219May 4, 2026Updated last month
- Modeling and statistical inference on fMRI data in Python☆99Apr 2, 2020Updated 6 years ago
- BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics data…☆250Updated this week
- rapidtide - a suite of programs for doing time lag correlation analysis on fMRI data☆95Updated this week
- Neuroimaging in Python FMRI analysis package☆412Dec 24, 2024Updated last year
- Post-processing of fMRIPrep, NiBabies, and HCP outputs☆114Updated this week
- Tool for automatic denoising, denoising strategies comparison, and functional connectivity data quality control.☆49Apr 17, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Cortical neuroimaging visualization in Python☆253Dec 15, 2023Updated 2 years ago
- MATLAB code for reading and writing CIFTI connectivity files☆71Feb 25, 2026Updated 3 months ago
- ICA-AROMA Software Package: a data-driven method to identify and remove head motion-related artefacts from functional MRI data.☆106May 17, 2024Updated 2 years ago
- Load fMRIprep confounds in python☆37Jan 30, 2022Updated 4 years ago
- Nuisance removal tool for fMRI data☆58Mar 9, 2024Updated 2 years ago
- Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes☆45Updated this week
- MATLAB/Octave GIfTI Library☆28Mar 10, 2025Updated last year