fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
☆718Feb 10, 2026Updated 3 weeks ago
Alternatives and similar repositories for fmriprep
Users that are interested in fmriprep are comparing it to the libraries listed below
Sorting:
- Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain☆350Jan 28, 2026Updated last month
- Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)☆162Feb 23, 2026Updated last week
- Workflows and interfaces for neuroimaging packages☆813Oct 27, 2025Updated 4 months ago
- Python tools for querying and manipulating BIDS datasets.☆255Updated this week
- Flexible DICOM conversion into structured directory layouts☆275Jan 22, 2026Updated last month
- Processing pipelines for the HCP☆636Updated this week
- Brain Imaging Data Structure (BIDS) Specification☆346Updated this week
- Fit Linear Models to BIDS Datasets☆80Dec 15, 2025Updated 2 months ago
- Common workflows for MRI (anatomical, functional, diffusion, etc)☆107Feb 23, 2026Updated last week
- Machine learning for NeuroImaging in Python☆1,365Feb 23, 2026Updated last week
- Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure☆191Jan 8, 2026Updated last month
- dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…☆73Feb 14, 2026Updated 2 weeks ago
- The Starter-kit has moved to the new BIDS website.☆276Feb 21, 2025Updated last year
- Brain Imaging Analysis Kit☆370Nov 5, 2025Updated 3 months ago
- The TemplateFlow Archive - A DataLad super-dataset☆93Jan 6, 2026Updated last month
- ☆714Sep 19, 2025Updated 5 months ago
- fmriflows is a consortium of many (dependent) fMRI analysis pipelines, including anatomical and functional pre-processing, univariate 1st…☆71Jun 7, 2022Updated 3 years ago
- dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC☆1,124Nov 4, 2025Updated 4 months ago
- Pycortex is a python-based toolkit for surface visualization of fMRI data☆650Updated this week
- A toolbox for comparing brain maps☆319Apr 23, 2025Updated 10 months ago
- Preprocessing of diffusion MRI☆178Feb 19, 2026Updated last week
- Validator for the Brain Imaging Data Structure☆184Dec 11, 2025Updated 2 months ago
- Configurable Pipeline for the Analysis of Connectomes☆79Oct 31, 2025Updated 4 months ago
- Neuroimaging analysis and visualization suite☆793Feb 26, 2026Updated last week
- Generate custom Docker and Singularity images, and minimize existing containers☆355Feb 23, 2026Updated last week
- BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics data…☆243Feb 9, 2026Updated 3 weeks ago
- A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.☆212Updated this week
- Modeling and statistical inference on fMRI data in Python☆98Apr 2, 2020Updated 5 years ago
- Post-processing of fMRIPrep, NiBabies, and HCP outputs☆108Updated this week
- Cortical neuroimaging visualization in Python☆252Dec 15, 2023Updated 2 years ago
- rapidtide - a suite of programs for doing time lag correlation analysis on fMRI data☆90Updated this week
- ICA-AROMA Software Package: a data-driven method to identify and remove head motion-related artefacts from functional MRI data.☆104May 17, 2024Updated last year
- The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface …☆173Jan 15, 2026Updated last month
- Neuroimaging in Python FMRI analysis package☆407Dec 24, 2024Updated last year
- Coordinate- and image-based meta-analysis in Python☆206Feb 6, 2026Updated 3 weeks ago
- Tool for automatic denoising, denoising strategies comparison, and functional connectivity data quality control.☆48Apr 17, 2023Updated 2 years ago
- Load fMRIprep confounds in python☆38Jan 30, 2022Updated 4 years ago
- Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes☆44Updated this week
- Preprocessing scripts for neuro imaging☆110Sep 28, 2023Updated 2 years ago