neurolabusc / surf-ice
GLSL surface rendering source code. Compiled versions available from NITRC. Loads 3DS, CTM, DXF, FreeSurfer, GII (GIfTI), GTS, LWO2, MS3D, MZ3, NV (BrainNetViewer), OBJ, OFF, PLY, STL, VTK. Tractography formats include BFloat, PDB, TCK, TRK, and VTK. Also NIfTI format voxelwise images.
☆108Updated last month
Alternatives and similar repositories for surf-ice:
Users that are interested in surf-ice are comparing it to the libraries listed below
- Simple medical imaging visualization tool designed for NIfTI images. Includes dcm2nii for conversion of DICOM, Philips, and other proprie…☆68Updated 3 years ago
- DEPRECATED development has moved to https://github.com/rordenlab/MRIcroGL☆59Updated 4 years ago
- NiiStat is a set of Matlab scripts for analyzing neuroimaging data from clinical populations☆31Updated 4 years ago
- Stand alone fMRI software suite for layer-fMRI analyses.☆91Updated 3 months ago
- niimath - a clone of fslmaths. Try the live demo:☆59Updated last month
- MATLAB/Octave GIfTI Library☆25Updated last year
- Generate subject connectomes from raw BIDS data & perform inter-subject connection density normalisation, using the MRtrix3 software pac…☆49Updated last year
- dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…☆65Updated last year
- Common workflows for MRI (anatomical, functional, diffusion, etc)☆91Updated last week
- Purifibre removes spurious streamlines from tractograms☆10Updated 2 years ago
- BIDS app wrapping recon-all from FreeSurfer☆42Updated 3 months ago
- Scripts to prepare MP2RAGE for Freesurfer☆25Updated last year
- BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)☆54Updated this week
- Non-linear warps between common rhesus macaque brain templates☆25Updated last year
- A web service for semi-automated conversion of raw imaging data to BIDS☆29Updated 2 months ago
- A Python implementation of 'dual-coding'☆41Updated 9 months ago
- A MATLAB toolbox for performing along-tract analysis of diffusion tensor imaging (DTI) MRI tractography data.☆43Updated 11 years ago
- A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)☆62Updated this week
- Computational Anatomy Toolbox for SPM12 or SPM25☆34Updated last week
- multi atlas transfer tools for neuroimaging (maTT)☆63Updated 3 months ago
- PREEMACS. pipeline for PREprocessing and Extraction of the MACaque brain Surface☆15Updated 9 months ago
- TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity☆54Updated 4 months ago
- MATLAB toolbox for visualizing brain data on surfaces.☆32Updated 2 months ago
- fmriflows is a consortium of many (dependent) fMRI analysis pipelines, including anatomical and functional pre-processing, univariate 1st…☆64Updated 2 years ago
- Handy scripts for SPM☆73Updated 4 years ago
- nii_preprocess adapted for LARC and ABC studies at UofSC☆22Updated 3 years ago
- Multimodal Surface Matching with Higher order Clique Reduction: Mac OS and Linux binaries☆37Updated 2 years ago
- This is the repository for the BioImage Suite Web Project☆81Updated 3 weeks ago
- The Midnight Scanning Club Codebase☆33Updated 5 years ago
- For calculating exact geodesic distances on cortical surface meshes☆53Updated 6 months ago