ngs-docs / 2016-metagenomics-sio
Metagenomics workshop at Scripps Institute of Oceanography
☆8Updated 8 years ago
Alternatives and similar repositories for 2016-metagenomics-sio:
Users that are interested in 2016-metagenomics-sio are comparing it to the libraries listed below
- ☆22Updated 5 years ago
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆15Updated 2 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- A repository for the lessons and notebooks used for Binder tutorials☆13Updated 4 years ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Updated 5 years ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 3 years ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆30Updated last year
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- Code for running the analysis in our universe of genes project☆8Updated 5 years ago
- Evolutionary Transcriptomics with R☆42Updated 3 weeks ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 8 years ago
- ☆43Updated last year
- ☆23Updated 6 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆27Updated last month
- Documentation for Evolview☆26Updated 3 years ago
- A snakemake workflow for metagenomic projects☆14Updated 2 years ago
- ☆26Updated 4 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 3 months ago
- Pangenome analysis of eukaryotes.☆18Updated 4 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆66Updated 7 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated last week
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago