Code for "Attentive Variational Information Bottleneck for TCR-peptide Interaction Prediction", Grazioli et al., Bioinformatics 2022
☆23Jan 10, 2023Updated 3 years ago
Alternatives and similar repositories for vibtcr
Users that are interested in vibtcr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Microbiome-based disease prediction with multimodal variational information bottlenecks, Grazioli et al., PLOS Computational Biology 2022☆25Apr 12, 2022Updated 4 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆36Apr 1, 2022Updated 4 years ago
- Sequence-based prediction of peptide-TCR interactions using paired chain data☆15Feb 2, 2026Updated 8 months ago
- ☆18Jan 30, 2023Updated 3 years ago
- a toolbox for metabolomic data analysis, visualization and ‘omic’ integration☆13Jun 21, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A light weight shiny based web app to access TCGA data☆15Apr 29, 2015Updated 11 years ago
- Machine Learning Research Wizard☆16Sep 29, 2026Updated last week
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Sep 12, 2019Updated 7 years ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆27Oct 18, 2022Updated 3 years ago
- ☆15Dec 15, 2015Updated 10 years ago
- predicting peptide and TCR interaction☆19Jan 27, 2021Updated 5 years ago
- This repository contains code for the paper "Uncertainty Estimation and Calibration with Finite-State Probabilistic RNNs" (Wang, Lawrence…☆17Mar 8, 2021Updated 5 years ago
- ☆12Jan 29, 2025Updated last year
- Ranked vaccine peptides for personalized cancer immunotherapy☆68Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Dec 13, 2023Updated 2 years ago
- Biotechnology protocols improved with Artificial Intelligence for the MIT biotechnology tournament iGem 2019. Check out our website!☆12Dec 12, 2019Updated 6 years ago
- ☆17Dec 8, 2021Updated 4 years ago
- We aim to make it easier for biomedical researchers to access and customize synthetic sequence data for the purpose of sharing and testin…☆11Jul 22, 2019Updated 7 years ago
- ☆12Apr 5, 2017Updated 9 years ago
- Representation learning for protein functional site analysis☆17Aug 11, 2023Updated 3 years ago
- Residue Level Alignment☆22Nov 21, 2024Updated last year
- Predict mutated T-cell epitopes from sequencing data☆30Updated this week
- Udacity Self-Driving Car Engineer Nanodegree. Project: Build a Traffic Sign Recognition Classifier☆10Apr 4, 2017Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Protein Annotation by Residue-Specific Enrichment: a site-based statistical method for interpretable protein function annotation☆16Jun 16, 2025Updated last year
- Equivariant layers for RC-complement symmetry in DNA sequence data☆13Feb 24, 2022Updated 4 years ago
- Data Standards Hackathon for NGS based typing.☆14Aug 11, 2026Updated last month
- functions and algorithms for single cell RNA-seq analyses☆11Jan 26, 2021Updated 5 years ago
- Simulator for structural variants in various types of next-generation sequencing data☆11Mar 21, 2017Updated 9 years ago
- A python script to calculate the relative coverage of X and Y chromosomes, and their associated error bars, from the depth of coverage at…☆16May 2, 2023Updated 3 years ago
- Anki decks for Technion courses☆14Apr 26, 2024Updated 2 years ago
- Listing of GPU based bioinformatics software & sites & publications☆12Jan 16, 2022Updated 4 years ago
- Official Repository of Adaptive Message Passing☆20Jul 7, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Source code for the paper "Positional Attention: Expressivity and Learnability of Algorithmic Computation"☆14May 26, 2025Updated last year
- ☆14Feb 8, 2016Updated 10 years ago
- ☆20Sep 22, 2015Updated 11 years ago
- TABR-BERT: an Accurate and Robust BERT-based Transfer Learning Model for TCR-pMHC Interaction Prediction☆12Jul 19, 2024Updated 2 years ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Jul 29, 2019Updated 7 years ago
- Quickstart tutorial Prerequisites Before reading this tutorial you should know a bit of Python. If you would like to refresh your memory,…☆16Dec 14, 2021Updated 4 years ago
- Simple implementations of attention modules adapted for the biological data domain.☆13May 20, 2025Updated last year