Code for "Attentive Variational Information Bottleneck for TCR-peptide Interaction Prediction", Grazioli et al., Bioinformatics 2022
☆23Jan 10, 2023Updated 3 years ago
Alternatives and similar repositories for vibtcr
Users that are interested in vibtcr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Microbiome-based disease prediction with multimodal variational information bottlenecks, Grazioli et al., PLOS Computational Biology 2022☆25Apr 12, 2022Updated 4 years ago
- ☆11May 3, 2022Updated 4 years ago
- Sequence-based prediction of peptide-TCR interactions using paired chain data☆13Feb 2, 2026Updated 4 months ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆35Apr 1, 2022Updated 4 years ago
- a toolbox for metabolomic data analysis, visualization and ‘omic’ integration☆13Jun 21, 2018Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A light weight shiny based web app to access TCGA data☆15Apr 29, 2015Updated 11 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Sep 12, 2019Updated 6 years ago
- ☆29Apr 3, 2025Updated last year
- ☆16Aug 11, 2021Updated 4 years ago
- LLM Inference Engine: High-performance CUDA-accelerated framework for large language model inference A cutting-edge, open-source impleme…☆11Sep 29, 2024Updated last year
- ☆23Sep 25, 2025Updated 8 months ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆27Oct 18, 2022Updated 3 years ago
- predicting peptide and TCR interaction☆20Jan 27, 2021Updated 5 years ago
- This repository contains code for the paper "Uncertainty Estimation and Calibration with Finite-State Probabilistic RNNs" (Wang, Lawrence…☆17Mar 8, 2021Updated 5 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆12Jan 29, 2025Updated last year
- Tutorial to start working with Multiple Instance Learning☆16Jul 5, 2023Updated 2 years ago
- Ranked vaccine peptides for personalized cancer immunotherapy☆63May 22, 2026Updated 3 weeks ago
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 13 years ago
- ☆15Dec 15, 2015Updated 10 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Dec 13, 2023Updated 2 years ago
- ☆11Jun 3, 2026Updated 2 weeks ago
- Official source code for Time is Not Enough: Time-Frequency based Explanation for Time-Series Black-Box Models☆13Dec 5, 2024Updated last year
- All the code from my projects for Udacity's Self Driving Car Engineer NanoDegree☆10Jul 7, 2017Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- The first multimodal QA dataset specifically designed for evaluating large TCM language models.☆21Oct 24, 2025Updated 7 months ago
- Learn fundamentals of scientific computing for biochemistry using Jupyter notebooks in Python☆17Dec 2, 2025Updated 6 months ago
- We aim to make it easier for biomedical researchers to access and customize synthetic sequence data for the purpose of sharing and testin…☆11Jul 22, 2019Updated 6 years ago
- ☆14Feb 17, 2022Updated 4 years ago
- ☆12Apr 5, 2017Updated 9 years ago
- EnzyMM - Enzyme Motif Miner - Geometric matching of catalytic motifs in protein structures.☆41May 23, 2026Updated 3 weeks ago
- an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression☆13Feb 26, 2024Updated 2 years ago
- Residue Level Alignment☆22Nov 21, 2024Updated last year
- Udacity Self-Driving Car Engineer Nanodegree. Project: Build a Traffic Sign Recognition Classifier☆10Apr 4, 2017Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Equivariant layers for RC-complement symmetry in DNA sequence data☆13Feb 24, 2022Updated 4 years ago
- Predict mutated T-cell epitopes from sequencing data☆30May 18, 2026Updated last month
- SODAR: System for Omics Data Access and Retrieval☆21Jun 10, 2026Updated last week
- Data Standards Hackathon for NGS based typing.☆14May 20, 2026Updated 3 weeks ago
- data processing code for MIMIC-IV 2.2☆15Jan 26, 2024Updated 2 years ago
- Listing of GPU based bioinformatics software & sites & publications☆12Jan 16, 2022Updated 4 years ago
- R/txshift: Efficient Estimation of the Causal Effects of Stochastic Interventions, with Corrections for Outcome-Dependent Sampling☆14Sep 21, 2024Updated last year