nec-research / vibtcrLinks
Code for "Attentive Variational Information Bottleneck for TCR-peptide Interaction Prediction", Grazioli et al., Bioinformatics 2022
☆23Updated 2 years ago
Alternatives and similar repositories for vibtcr
Users that are interested in vibtcr are comparing it to the libraries listed below
Sorting:
- Genomic sequence preprocessing toolkit☆12Updated this week
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Promoter activity measurement and modeling; artificial promoter design and testing☆13Updated 2 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆51Updated 6 years ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- Repository for the paper: "SPACE: STRING proteins as complementary embeddings"☆28Updated this week
- HLA-II ligand predictor.☆44Updated 2 years ago
- Analysis platform for large-scale dose-dependent data☆25Updated last month
- Functional Embedding of Gene Signatures☆46Updated last year
- Python Client Package for WikiPathways☆20Updated this week
- MHC Class I and Class II neoantigen binding prediction☆32Updated 2 months ago
- Flexible analysis of high-content CRISPR screening☆31Updated last month
- HLA-I ligand predictor☆43Updated 9 months ago
- Multi-Omics Peptide Generator☆27Updated 2 weeks ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- Generalizable AI predicts immunotherapy outcomes across cancers and treatments☆39Updated this week
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆82Updated last year
- Comprehensive Python client for the Uniprot REST API☆50Updated 3 months ago
- ☆38Updated last year
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆20Updated 2 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆33Updated 3 years ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆42Updated 2 months ago
- An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms☆18Updated 5 years ago
- Computational Optimization of DNA Activity (CODA)☆61Updated 5 months ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- ☆18Updated last year
- Using MASST or fastMASST, adding metadata onto a tree ontology for microbes☆21Updated last week
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- surrogate quantitative interpretability for deepnets☆24Updated last month
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆29Updated 2 months ago