Alternatives and similar repositories for vibtcr

Users that are interested in vibtcr are comparing it to the libraries listed below

• mnielLab / NetTCR-2.2
  Sequence-based prediction of peptide-TCR interactions using paired chain data
  ☆13Updated last year
• ML4GLand / SeqPro
  Genomic sequence preprocessing toolkit
  ☆13Updated last month
• Noble-Lab / crema
  Confidence Estimation for Mass Spectrometry Proteomics
  ☆13Updated 6 months ago
• nf-core / metaboigniter
  Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.
  ☆24Updated 6 months ago
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆54Updated 6 years ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆45Updated 2 years ago
• IEDB / PEPMatch
  ☆23Updated 3 weeks ago
• kusterlab / curve_curator
  Analysis platform for large-scale dose-dependent data
  ☆26Updated 2 weeks ago
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 4 years ago
• Roestlab / PythonProteomics
  A collection of available Python tools for Proteomics analysis
  ☆65Updated 6 years ago
• robinschmid / microbe_masst
  Using MASST or fastMASST, adding metadata onto a tree ontology for microbes
  ☆21Updated last week
• KarchinLab / mhcnuggets
  MHC Class I and Class II neoantigen binding prediction
  ☆33Updated 4 months ago
• GreiffLab / immuneSIM
  ☆38Updated 2 years ago
• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆24Updated last year
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• Genentech / polygraph
  Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …
  ☆38Updated 8 months ago
• dgidb / dgidb-v5
  Providing interactions between drugs and genes sourced from a variety of publications and knowledgebases
  ☆34Updated 2 months ago
• s6juncheng / BERTMHC
  MHC-peptide class II interaction prediction, binding, presentation
  ☆23Updated 3 years ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆56Updated last year
• emmijokinen / TCRconv
  TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…
  ☆25Updated 3 years ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆53Updated 2 months ago
• smolkelab / promoter_design
  Promoter activity measurement and modeling; artificial promoter design and testing
  ☆13Updated 2 years ago
• CompOmics / denovogui
  Graphical user interface for de novo sequencing of tandem mass spectra
  ☆15Updated last year
• JinsenLi / deepDNAshape
  A method to predict DNA shape features considering farther flanking region.
  ☆37Updated last year
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆43Updated 2 months ago
• ZhenyiWangTHU / HemaScopeR
  a user-friendly and modular design R package tailored for analyzing single-cell and spatial transcriptome sequencing data of hematopoieti…
  ☆18Updated 7 months ago
• GfellerLab / MoDec
  Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.
  ☆15Updated 9 months ago
• cwieder / PathIntegrate
  PathIntegrate Python package for pathway-based multi-omics data integration
  ☆17Updated last year
• denisbeslic / denovopipeline
  Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
  ☆42Updated last year
• goodarzilab / SwitchFinder
  ☆18Updated last year