billgreenwald / Pubmed-Batch-DownloadLinks
Batch download articles based on PMID (Pubmed ID)
☆125Updated last year
Alternatives and similar repositories for Pubmed-Batch-Download
Users that are interested in Pubmed-Batch-Download are comparing it to the libraries listed below
Sorting:
- Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on …☆79Updated last year
- A Python package to download full article PDFs from OA publications☆45Updated 5 months ago
- Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.☆119Updated last week
- Python script that downloads all pubmed abstracts corresponding to user-specified keyword searches, by performing automated NCBI E-utilit…☆30Updated 5 years ago
- PubMed Mapper: A Python library that map PubMed XML to Python object☆45Updated 2 years ago
- Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases☆49Updated 6 months ago
- A framework for keeping biomedical text mining result up-to-date☆42Updated 4 years ago
- A Python library to work with, analyze, filter and inspect the Human Phenotype Ontology☆29Updated 3 months ago
- Repository for student projects within biomedical text mining from Lund University☆54Updated 2 years ago
- A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list☆37Updated last year
- PubMed analysis: code and data☆97Updated 3 years ago
- Biomedical knowledge mining using GOSemSim and clusterProfiler☆77Updated 2 years ago
- AIONER☆55Updated 11 months ago
- Retrieve and process PubTator annotations☆44Updated last year
- Python Programming for Biologists☆133Updated 2 months ago
- ☆32Updated 5 months ago
- Python library for extracting HPO encoded phenotypes from text☆30Updated last year
- A resource of adverse drug effects extracted from FDA structured product labels☆78Updated last week
- Associations of genomic features, drugs and diseases☆48Updated 2 years ago
- A full-text article retrieval pipeline for biomedical literature.☆21Updated 3 months ago
- simplified searching, fetching, and parsing records from NCBI using their E-utilities interface☆62Updated last year
- phenotype-based prioritization of candidate genes for human diseases☆65Updated 2 years ago
- a module to calculate the MeSH similarity☆25Updated 3 years ago
- Generate safety signal statistics from FDA FAERS data☆49Updated last year
- An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study☆103Updated 2 years ago
- ☆26Updated last year
- PhenoTagger☆57Updated last year
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆45Updated 4 years ago
- MyGene.info: A BioThings API for gene annotations☆126Updated last month
- SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases☆56Updated 10 months ago