Alternatives and similar repositories for Pubmed-Batch-Download:

Users that are interested in Pubmed-Batch-Download are comparing it to the libraries listed below

• krassowski / easy-entrez
  Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on …
  ☆73Updated last year
• soultoolman / pubmed-mapper
  PubMed Mapper: A Python library that map PubMed XML to Python object
  ☆44Updated last year
• metapub / metapub
  Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.
  ☆106Updated last month
• ddomingof / PubMed2PDF
  A Python package to download full article PDFs from OA publications
  ☆40Updated last month
• jakelever / pubrunner
  A framework for keeping biomedical text mining result up-to-date
  ☆41Updated 4 years ago
• tatonetti-lab / onsides
  A resource of adverse drug effects extracted from FDA structured product labels
  ☆68Updated 2 weeks ago
• EclipseCN / PhenoBERT
  A combined deep learning tool for automated recognition of human phenotype ontology
  ☆23Updated 2 years ago
• luozhhub / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆24Updated 3 years ago
• ncbi / AIONER
  AIONER
  ☆49Updated 6 months ago
• Orphanet / Orphadata_aggregated
  Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases
  ☆45Updated 2 months ago
• greenelab / pubtator
  Retrieve and process PubTator annotations
  ☆44Updated last year
• genomics-dev / ukb-pret
  ☆24Updated 3 weeks ago
• YuLab-SMU / biomedical-knowledge-mining-book
  Biomedical knowledge mining using GOSemSim and clusterProfiler
  ☆75Updated last year
• ncbi / BioConceptVec
  ☆40Updated 4 years ago
• erilu / pubmed-abstract-compiler
  Python script that downloads all pubmed abstracts corresponding to user-specified keyword searches, by performing automated NCBI E-utilit…
  ☆30Updated 4 years ago
• WGLab / EHR-Phenolyzer
  A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list
  ☆36Updated last year
• 2mh / PyBioC
  Python library for work with BioCreative files
  ☆13Updated 6 years ago
• PheWAS / PheWAS
  The PheWAS R package
  ☆138Updated 2 months ago
• choishingwan / PRSice
  A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores
  ☆191Updated 6 months ago
• emreg00 / toolbox
  Toolbox - generic utilities for data processing (e.g., parsing, proximity, guild scoring, etc...)
  ☆109Updated 2 years ago
• Tian312 / PICO_Parser
  A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework
  ☆45Updated 4 years ago
• bionlplab / bioc
  Data structures and code to read/write BioC XML and Json.
  ☆31Updated last year
• choishingwan / PRS-Tutorial
  A tutorial on how to run basic polygenic risk score analysis
  ☆75Updated 2 years ago
• ncbi-nlp / pubtator-gpt
  ☆20Updated last year
• anergictcell / pyhpo
  A Python library to work with, analyze, filter and inspect the Human Phenotype Ontology
  ☆26Updated 8 months ago
• jakelever / pgxmine
  Text mining for pharmacogenomic associations for PharmGKB
  ☆26Updated 2 years ago
• snap-stanford / KGWAS
  KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph
  ☆54Updated 2 weeks ago
• Aitslab / BioNLP
  Repository for student projects within biomedical text mining from Lund University
  ☆51Updated last year
• statgen / pheweb
  A tool to build a website to browse hundreds or thousands of GWAS.
  ☆168Updated 6 months ago
• dhimmel / integrate
  Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing
  ☆32Updated 7 years ago