Alternatives and similar repositories for Pubmed-Batch-Download

Users that are interested in Pubmed-Batch-Download are comparing it to the libraries listed below

• vsbuffalo / rna-seq-example

  View on GitHub
  An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)
  ☆16Jul 3, 2012Updated 13 years ago
• titipata / pubmed_parser

  View on GitHub
  A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset
  ☆725Jul 31, 2025Updated 6 months ago
• LinguisticAnomalies / pls_retrieval

  View on GitHub
  Repository for paper CELLS: A Parallel Corpus for Biomedical Lay Language Generation
  ☆19Apr 2, 2024Updated last year
• StantonLabDartmouth / AppScanGEO

  View on GitHub
  Source code for ScanGEO Shiny App
  ☆15Apr 18, 2022Updated 3 years ago
• ShixiangWang / Git-Handbook

  View on GitHub
  Git使用手册
  ☆17Mar 10, 2019Updated 6 years ago
• bioconductor-china / software

  View on GitHub
  软件方面的包 (包括各种芯片数据处理，NGS数据处理，差异分析等等！)
  ☆14Apr 23, 2016Updated 9 years ago
• jzsh2000 / seurat-shiny

  View on GitHub
  ☆19Jul 6, 2023Updated 2 years ago
• marschall-lab / strand-seq-graph-phasing

  View on GitHub
  ☆13May 27, 2025Updated 8 months ago
• ding-lab / GenomeVIP

  View on GitHub
  ☆20Feb 24, 2017Updated 8 years ago
• hfang-bristol / dnet

  View on GitHub
  An open-source R package for omics data integrative analysis in terms of network, evolution and ontology
  ☆18Jan 4, 2024Updated 2 years ago
• ShujiaHuang / cmdbtools

  View on GitHub
  Command line tools for CMDB varaints browser
  ☆23May 14, 2024Updated last year
• gerstung-lab / MDS-expression

  View on GitHub
  R code for Combining gene mutation with gene expression data improves outcome prediction in myelodysplastic syndromes
  ☆13Mar 23, 2016Updated 9 years ago
• livelace / ner-tagger

  View on GitHub
  Firefox and Chrome compatible extension that acts as annotation tool for websites (Named Entity Recognition)
  ☆10Feb 17, 2019Updated 6 years ago
• som-shahlab / Clinfo.AI

  View on GitHub
  This is Clinfo.AI Demo Instruction
  ☆37Aug 20, 2024Updated last year
• wkl1990 / Illumina450K-methylation

  View on GitHub
  From IDAT to beta.
  ☆25Jul 13, 2018Updated 7 years ago
• YangLab / bamTobw

  View on GitHub
  Convert BAM files to bigWig files with a simple command
  ☆20Nov 30, 2018Updated 7 years ago
• kundajelab / training_camp

  View on GitHub
  Genetics training camp
  ☆21Sep 8, 2020Updated 5 years ago
• lotharwissler / bioinformatics

  View on GitHub
  ☆10Aug 29, 2012Updated 13 years ago
• issararab / EPSAPG

  View on GitHub
  EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST
  ☆11Apr 4, 2024Updated last year
• EuropePMC / Biojs.Annotator

  View on GitHub
  Javascript based component for highlighting text-mined annotations of different semantic types in a full text article identified by a PMC…
  ☆11Nov 29, 2016Updated 9 years ago
• HAShihab / fathmm

  View on GitHub
  The Functional Analysis through Hidden Markov Models Software and Server
  ☆14Nov 6, 2014Updated 11 years ago
• viralInformatics / VIGA

  View on GitHub
  ☆15May 22, 2025Updated 8 months ago
• VirtualPharmacist / vp

  View on GitHub
  Virtual Pharmacist is a web tool that interprets personal genome for the impact of genetic variation on drug response. It can take varian…
  ☆13Nov 16, 2015Updated 10 years ago
• jakelever / knowledgediscovery

  View on GitHub
  Analysis code for knowledge discovery project
  ☆12Sep 25, 2018Updated 7 years ago
• wcmc-its / ReCiter-PubMed-Retrieval-Tool

  View on GitHub
  A tool for retrieving articles from PubMed. Can work as a standalone application or in conjunction with the author disambiguation applica…
  ☆14Dec 4, 2025Updated 2 months ago
• cran / GOplot

  View on GitHub
   This is a read-only mirror of the CRAN R package repository. GOplot — Visualization of Functional Analysis Data. Homepage: https://gith…
  ☆15Mar 30, 2016Updated 9 years ago
• cole-trapnell-lab / monocle2-rge-paper

  View on GitHub
  Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)
  ☆29Jul 1, 2020Updated 5 years ago
• mjsull / HapFlow

  View on GitHub
  Visualise interstrain recombination from environmental samples.
  ☆26Apr 18, 2019Updated 6 years ago
• ajmazurie / kegg-animate-pathway

  View on GitHub
  Command-line utility to color objects of a KEGG pathway with arbitrary colors
  ☆34Jul 10, 2015Updated 10 years ago
• enormandeau / ncbi_blast_tutorial

  View on GitHub
  Crash course for NCBI blast tools
  ☆47Jun 17, 2019Updated 6 years ago
• datacarpentry / rr-intro

  View on GitHub
  Introduction materials for Reproducible Research Curriculum
  ☆12Jun 18, 2020Updated 5 years ago
• brendel-group / compositional-ood-generalization

  View on GitHub
  Official code for the paper "Compositional Generalization from First Principles" (NeurIPS 2023)
  ☆13Jul 25, 2023Updated 2 years ago
• lrgr / multifactorial-immune-response

  View on GitHub
  Multifactorial modeling of response to checkpoint inhibitor immunotherapy from tumor, immune, and clinical features
  ☆17Jun 29, 2018Updated 7 years ago
• CellProfiler / stitching

  View on GitHub
  Image stitching
  ☆12Dec 23, 2018Updated 7 years ago
• RabadanLab / Pegasus

  View on GitHub
  Annotation and Prediction of Oncogenic Gene Fusions in RNAseq
  ☆12Feb 20, 2016Updated 9 years ago
• andrewjesaitis / variant-annotation-comparison-2017

  View on GitHub
  Work supporting the comparison of SnpEff and VEP effect prediction and HGVS identifiers
  ☆11Mar 15, 2017Updated 8 years ago
• EarlhamInst / 361Division

  View on GitHub
  361 Division - Scientific Training, Education and Learning
  ☆28Oct 1, 2020Updated 5 years ago
• abschneider / StrainHub

  View on GitHub
  Welcome to the StrainHub Repo - Files and Data - StrainHub Online:
  ☆17Jun 26, 2022Updated 3 years ago
• NCBI-Hackathons / PubRunner

  View on GitHub
  Framework for running text mining tools on latest publications. Main page at:
  ☆14Jul 13, 2022Updated 3 years ago