billgreenwald / Pubmed-Batch-DownloadLinks
Batch download articles based on PMID (Pubmed ID)
☆128Updated last year
Alternatives and similar repositories for Pubmed-Batch-Download
Users that are interested in Pubmed-Batch-Download are comparing it to the libraries listed below
Sorting:
- Python script that downloads all pubmed abstracts corresponding to user-specified keyword searches, by performing automated NCBI E-utilit…☆31Updated 5 years ago
- Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases☆50Updated last month
- A resource of adverse drug effects extracted from FDA structured product labels☆82Updated 2 months ago
- Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on …☆79Updated last year
- ☆29Updated last year
- ☆22Updated 2 years ago
- A combined deep learning tool for automated recognition of human phenotype ontology☆25Updated 2 years ago
- A framework for keeping biomedical text mining result up-to-date☆42Updated 5 years ago
- PubMed Mapper: A Python library that map PubMed XML to Python object☆46Updated 2 years ago
- ☆20Updated 2 years ago
- ☆25Updated last year
- A full-text article retrieval pipeline for biomedical literature.☆21Updated last week
- Explainable AI for Bioinformatics☆124Updated 2 years ago
- MyGene.info: A BioThings API for gene annotations☆127Updated 3 weeks ago
- Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.☆122Updated this week
- A Python package to download full article PDFs from OA publications☆48Updated 7 months ago
- PhenoTagger☆58Updated last year
- Biomedical knowledge mining using GOSemSim and clusterProfiler☆79Updated 2 years ago
- Official repository for GDC User Guides in Markdown format☆60Updated last week
- AIONER☆59Updated last year
- ☆38Updated 3 months ago
- The Pathway Interaction Database (PID) is software supporting the access and display of information about bio-molecular interactions and …☆15Updated 9 years ago
- Framework for Interpretable Neural Networks☆109Updated 5 months ago
- OBO-formatted ontologies → networkx (Python 3)☆146Updated 5 months ago
- Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records☆37Updated 2 years ago
- Disease Ontology Semantic and Enrichment analysis☆119Updated 4 months ago
- Python Programming for Biologists☆137Updated 4 months ago
- Converts Ensembl, Uniprot, and HGNC IDs to Entrez Gene Id☆46Updated 2 years ago
- Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!☆14Updated last year
- Text mining for pharmacogenomic associations for PharmGKB☆26Updated 2 years ago