ncbi / bert_gt
☆31Updated 8 months ago
Related projects ⓘ
Alternatives and complementary repositories for bert_gt
- ☆19Updated last year
- MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)☆19Updated last year
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆27Updated 3 years ago
- Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]☆65Updated last year
- Repository used to collect biomedical corpus on the Internet!☆31Updated 4 years ago
- Bio relation extraction labeled dataset☆42Updated 2 years ago
- BERT-based Biomedical Text Summarizer☆23Updated 5 years ago
- BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction☆26Updated 11 months ago
- ☆34Updated 3 years ago
- Repository for student projects within biomedical text mining from Lund University☆51Updated last year
- BioELMo is a biomedical version of embeddings from language model (ELMo), pre-trained on PubMed abstracts.☆33Updated 4 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆160Updated last year
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆75Updated 2 years ago
- DeepEventMine: End-to-end Neural Nested Event Extraction from Biomedical Texts☆95Updated 2 years ago
- Codes for the EMNLP'2020 paper "Predicting Clinical Trial Results by Implicit Evidence Integration".☆14Updated 3 years ago
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆171Updated last year
- Generative Biomedical Entity Linking via Knowledge Base-Guided Pre-training and Synonyms-Aware Fine-tuning [NAACL 2022]☆18Updated last year
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…☆37Updated 6 years ago
- A project for developing transformer-based models for clinical relation extraction☆126Updated last year
- SciFive: a text-text transformer model for biomedical literature☆90Updated 5 months ago
- ☆50Updated 2 years ago
- Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)☆133Updated 3 months ago
- BioBART: Pretraining and Evaluation of A Biomedical Generative Language Model [ACL-BioNLP 2022]☆51Updated 2 years ago
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆174Updated 7 months ago
- Fast and Effective Biomedical Entity Linking Using a Dual Encoder☆19Updated 2 years ago
- The corresponding code for our paper: A sequence-to-sequence approach for document-level relation extraction.☆60Updated 5 months ago
- Code for the paper Biomedical Event Extraction with Hierarchical Knowledge Graphs☆60Updated last year
- Named Entity Recognition for biomedical entities☆47Updated last year
- Bioformer: an efficient BERT model for biomedical text mining☆53Updated last year
- A Keras implementation of the AAAI21 paper "a lightweight neural model for biomedical entity linking"☆49Updated 2 years ago