ncbi / bert_gt

Related projects ⓘ

Alternatives and complementary repositories for bert_gt

• suamin / MIL-RBERT
  MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)
  ☆19Updated last year
• usmaann / BioALBERT
  Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT
  ☆27Updated 3 years ago
• ncbi / BioRED
  ☆19Updated last year
• GanjinZero / KeBioLM
  Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]
  ☆65Updated last year
• chanzuckerberg / ChemDisGene
  Bio relation extraction labeled dataset
  ☆42Updated 2 years ago
• bionlp-hzau / BioNLP-Corpus
  Repository used to collect biomedical corpus on the Internet!
  ☆31Updated 4 years ago
• lasigeBioTM / BiOnt
  BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction
  ☆26Updated 11 months ago
• Alibaba-NLP / EBM-Net
  Codes for the EMNLP'2020 paper "Predicting Clinical Trial Results by Implicit Evidence Integration".
  ☆14Updated 3 years ago
• isegura / DDICorpus
  ☆35Updated 4 years ago
• GanjinZero / CODER
  CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]
  ☆75Updated 2 years ago
• cambridgeltl / sapbert
  [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.
  ☆175Updated last year
• Aitslab / BioNLP
  Repository for student projects within biomedical text mining from Lund University
  ☆51Updated last year
• tigerchen52 / Biomedical-Entity-Linking
  A Keras implementation of the AAAI21 paper "a lightweight neural model for biomedical entity linking"
  ☆52Updated 2 years ago
• zonghui0228 / BioMedical-NLP-corpus
  Biomedical NLP Corpus or Datasets.
  ☆60Updated 2 years ago
• uf-hobi-informatics-lab / ClinicalTransformerRelationExtraction
  A project for developing transformer-based models for clinical relation extraction
  ☆127Updated last year
• Yuanhy1997 / GenBioEL
  Generative Biomedical Entity Linking via Knowledge Base-Guided Pre-training and Synonyms-Aware Fine-tuning [NAACL 2022]
  ☆18Updated last year
• dmis-lab / BioSyn
  ACL'2020: Biomedical Entity Representations with Synonym Marginalization
  ☆161Updated last year
• haiya1994 / BERE
  ☆50Updated 2 years ago
• BaderLab / Biomedical-Corpora
  A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…
  ☆37Updated 6 years ago
• JohnGiorgi / seq2rel
  The corresponding code for our paper: A sequence-to-sequence approach for document-level relation extraction.
  ☆61Updated 5 months ago
• WGLab / Bioformer
  Bioformer: an efficient BERT model for biomedical text mining
  ☆53Updated last year
• r-mal / umls-embeddings
  Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System
  ☆39Updated 4 years ago
• facebookresearch / bio-lm
  We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.
  ☆157Updated 3 years ago
• xuanwang91 / AutoBioNER
  Distantly Supervised Biomedical Named Entity Recognition with Dictionary Expansion: https://ieeexplore.ieee.org/document/8983212
  ☆12Updated 4 years ago
• GanjinZero / BioBART
  BioBART: Pretraining and Evaluation of A Biomedical Generative Language Model [ACL-BioNLP 2022]
  ☆52Updated 2 years ago
• udel-biotm-lab / BERT-CLRE
  ☆24Updated 3 years ago
• aistairc / DeepEventMine
  DeepEventMine: End-to-end Neural Nested Event Extraction from Biomedical Texts
  ☆95Updated 2 years ago
• PlusLabNLP / GEANet-BioMed-Event-Extraction
  Code for the paper Biomedical Event Extraction with Hierarchical Knowledge Graphs
  ☆60Updated last year
• sg-wbi / belb
  Biomedical Entity Linking Benchmark
  ☆10Updated last week
• lasigeBioTM / PGR
  A Silver Standard Corpus of Human Phenotype-Gene Relations
  ☆12Updated 2 years ago