ncbi / bert_gtLinks
☆32Updated last year
Alternatives and similar repositories for bert_gt
Users that are interested in bert_gt are comparing it to the libraries listed below
Sorting:
- BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction☆26Updated last year
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆29Updated 4 years ago
- Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]☆65Updated 2 years ago
- Bio relation extraction labeled dataset☆45Updated 3 years ago
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆194Updated 2 years ago
- ☆27Updated 2 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆169Updated 2 years ago
- Repository used to collect biomedical corpus on the Internet!☆35Updated 4 years ago
- ☆35Updated 4 years ago
- MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)☆19Updated 2 years ago
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆190Updated last year
- Repository for student projects within biomedical text mining from Lund University☆54Updated 2 years ago
- SciFive: a text-text transformer model for biomedical literature☆96Updated last year
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆80Updated 3 years ago
- Generative Biomedical Entity Linking via Knowledge Base-Guided Pre-training and Synonyms-Aware Fine-tuning [NAACL 2022]☆19Updated 2 years ago
- Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)☆135Updated 11 months ago
- Code and dataset of EMNLP 2020 paper "Infusing Disease Knowledge into BERT for Health Question Answering, Medical Inference and Disease N…☆69Updated 4 years ago
- Distantly Supervised Biomedical Named Entity Recognition with Dictionary Expansion: https://ieeexplore.ieee.org/document/8983212☆12Updated 5 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆178Updated 3 years ago
- Code for the paper Biomedical Event Extraction with Hierarchical Knowledge Graphs☆62Updated 2 years ago
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆161Updated 3 years ago
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆45Updated 4 years ago
- Codes for the EMNLP'2020 paper "Predicting Clinical Trial Results by Implicit Evidence Integration".☆14Updated 4 years ago
- A Keras implementation of the AAAI21 paper "a lightweight neural model for biomedical entity linking"☆54Updated 2 years ago
- ☆230Updated 7 years ago
- DeepEventMine: End-to-end Neural Nested Event Extraction from Biomedical Texts☆95Updated 2 years ago
- Bioformer: an efficient BERT model for biomedical text mining☆55Updated 2 years ago
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆296Updated 3 years ago
- 🧬 BioRelEx: Biological Relation Extraction Benchmark @ ACL BioNLP Workshop 2019☆19Updated 5 years ago
- A Silver Standard Corpus of Human Phenotype-Gene Relations☆13Updated 2 years ago