nasa / GeneLab_Data_ProcessingLinks
Standard bioinformatics pipelines for omics data from spaceflight and space-relevant experiments.
☆96Updated 3 weeks ago
Alternatives and similar repositories for GeneLab_Data_Processing
Users that are interested in GeneLab_Data_Processing are comparing it to the libraries listed below
Sorting:
- optimization of ribosome P-site positioning in ribosome profiling data☆55Updated 9 months ago
- Bioinformatics one-liner for 100 days☆49Updated last year
- cDNA read preprocessing☆81Updated last year
- HPC based pipelines for variant calling using GATK☆17Updated 5 years ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆85Updated this week
- Detecting contamination in NGS data and multi-species analysis☆80Updated last month
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated last month
- Config files used to define parameters specific to compute environments at different Institutions☆104Updated this week
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆91Updated 3 years ago
- Precision HLA typing from next-generation sequencing data☆75Updated 3 weeks ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆120Updated 2 weeks ago
- NBIS/Elixir course: Tools for Reproducible Research☆65Updated last month
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆51Updated 3 weeks ago
- circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data☆59Updated 3 weeks ago
- ☆83Updated 3 months ago
- A small-RNA sequencing analysis pipeline☆98Updated this week
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆37Updated 4 years ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆50Updated 2 years ago
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆133Updated last year
- JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions☆103Updated 2 weeks ago
- ☆60Updated 4 months ago
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆52Updated 2 years ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆72Updated last year
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆99Updated last week
- Quantification of transposable element expression using RNA-seq☆76Updated last year
- Analysis of Chromosome Conformation Capture data (Hi-C)☆104Updated 3 weeks ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year
- ☆72Updated this week
- Software for Quantifying Interspersed Repeat Expression☆63Updated 3 years ago
- CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens☆81Updated 5 years ago