nasa / GeneLab_Data_ProcessingLinks
Standard bioinformatics pipelines for omics data from spaceflight and space-relevant experiments.
☆91Updated 3 weeks ago
Alternatives and similar repositories for GeneLab_Data_Processing
Users that are interested in GeneLab_Data_Processing are comparing it to the libraries listed below
Sorting:
- Bioinformatics one-liner for 100 days☆49Updated last year
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆81Updated this week
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆47Updated 2 years ago
- Analysis of Chromosome Conformation Capture data (Hi-C)☆101Updated 2 months ago
- cDNA read preprocessing☆78Updated last year
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated last month
- optimization of ribosome P-site positioning in ribosome profiling data☆53Updated 6 months ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆57Updated 3 months ago
- NBIS/Elixir course: Tools for Reproducible Research☆63Updated last week
- A small-RNA sequencing analysis pipeline☆93Updated 3 months ago
- HemTools: a collection of NGS pipelines and bioinformatic analyses☆73Updated 2 weeks ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆131Updated last year
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆117Updated 7 months ago
- A Python-based EGA download client☆107Updated last year
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆132Updated last year
- GENome Organisation Visual Analytics☆80Updated 8 months ago
- Quantification of transposable element expression using RNA-seq☆75Updated last year
- Scripts and data for Plotting in R for Biologists, a video course on YouTube☆61Updated 5 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated last week
- Suite of tools for processing BRB-seq data☆28Updated 3 months ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated 9 months ago
- Publication quality NGS track plotting☆114Updated 3 years ago
- circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data☆58Updated 2 weeks ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated 2 months ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆136Updated 3 weeks ago
- Software for Quantifying Interspersed Repeat Expression☆63Updated 3 years ago
- ☆50Updated 4 years ago
- This package scales the huge gnomAD files to a SQLite database, which is easy and fast to query. It extracts from a gnomAD vcf the minor …☆48Updated 3 months ago
- Config files used to define parameters specific to compute environments at different Institutions☆103Updated this week
- ☆58Updated 2 months ago