nasa / GeneLab_Data_ProcessingLinks
Standard bioinformatics pipelines for omics data from spaceflight and space-relevant experiments.
☆104Updated 3 weeks ago
Alternatives and similar repositories for GeneLab_Data_Processing
Users that are interested in GeneLab_Data_Processing are comparing it to the libraries listed below
Sorting:
- Detecting contamination in NGS data and multi-species analysis☆81Updated 2 months ago
- cDNA read preprocessing☆82Updated last year
- Config files used to define parameters specific to compute environments at different Institutions☆106Updated this week
- optimization of ribosome P-site positioning in ribosome profiling data☆57Updated 10 months ago
- ☆60Updated 5 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆99Updated last month
- Analysis of Chromosome Conformation Capture data (Hi-C)☆105Updated last month
- A small-RNA sequencing analysis pipeline☆98Updated this week
- NBIS/Elixir course: Tools for Reproducible Research☆65Updated this week
- ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data☆86Updated last year
- Sequana: a set of Snakemake NGS pipelines☆151Updated last month
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆87Updated last month
- A simple RNA-Seq differential gene expression pipeline using Nextflow☆100Updated 5 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 5 months ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆92Updated 3 years ago
- ☆109Updated last month
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆37Updated 4 years ago
- Bioinformatics one-liner for 100 days☆49Updated last year
- Software for Quantifying Interspersed Repeat Expression☆63Updated 3 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆107Updated 7 months ago
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆135Updated last year
- Quantification of transposable element expression using RNA-seq☆78Updated last year
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆52Updated 2 years ago
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆97Updated 2 months ago
- HiC uniform processing pipeline☆62Updated 2 years ago
- Fast HLA type inference from whole-genome data☆141Updated 9 months ago
- Detection of m6A from direct RNA-Seq data☆130Updated 7 months ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated this week
- A Python-based EGA download client☆110Updated last year
- Genomics data visualization in Python by using matplotlib.☆68Updated 2 years ago