nadeemlab / smprofilerLinks
Spatial Multiomics Profiler for Spatial Characterization of Tissue Microenvironment (https://smprofiler.io)
☆22Updated last week
Alternatives and similar repositories for smprofiler
Users that are interested in smprofiler are comparing it to the libraries listed below
Sorting:
- Histology Topography Cytometry Analysis Toolbox☆67Updated 2 years ago
- A pixel classification based multiplexed image segmentation pipeline☆101Updated last year
- The Single-Cell Pathology Landscape of Breast Cancer☆27Updated 5 years ago
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆49Updated 3 years ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated 2 weeks ago
- R package for visualization of highly multiplexed imaging data☆33Updated 4 months ago
- IHC-image analysis workflow☆23Updated 7 years ago
- Self-supervised representation learning combining GTEx histology, RNA-seq and WGS☆31Updated 6 months ago
- ☆31Updated 4 years ago
- QuPath extension to run StarDist nucleus detection☆46Updated 3 months ago
- DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images☆55Updated last week
- SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention☆43Updated 4 months ago
- ☆39Updated last year
- Integrated pipeline for multiplexed image analysis☆96Updated 6 months ago
- ☆13Updated 2 years ago
- A toolkit for processing multiplexed tissue images☆64Updated this week
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆11Updated 2 years ago
- ☆23Updated 2 years ago
- ☆33Updated 9 months ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆45Updated last year
- version 1 scripts for CODA☆55Updated last year
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆59Updated last year
- ☆54Updated 7 months ago
- Accessible and interoperable whole slide image analysis☆140Updated last week
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆63Updated 4 months ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆61Updated last year
- Spatial Single-Cell Analysis Toolkit☆99Updated 3 months ago
- ☆35Updated 2 weeks ago
- Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images☆21Updated 5 months ago
- Spatial cellular architecture predicts prognosis in glioblastoma - Nature Communications☆25Updated last year