nadeemlab / smprofilerLinks
Spatial Multiomics Profiler for Spatial Characterization of Tissue Microenvironment (https://smprofiler.io)
☆22Updated this week
Alternatives and similar repositories for smprofiler
Users that are interested in smprofiler are comparing it to the libraries listed below
Sorting:
- Histology Topography Cytometry Analysis Toolbox☆67Updated 2 years ago
- ☆23Updated 2 years ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated last week
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆61Updated 4 months ago
- Accessible and interoperable whole slide image analysis☆133Updated last week
- DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images☆53Updated 2 weeks ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆11Updated 2 years ago
- ☆32Updated 8 months ago
- Integrated pipeline for multiplexed image analysis☆97Updated 5 months ago
- R package for visualization of highly multiplexed imaging data☆33Updated 3 months ago
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆49Updated 3 years ago
- Multiple-choice microscopy pipeline☆136Updated 2 weeks ago
- A toolkit for processing multiplexed tissue images☆63Updated this week
- Spatial Single-Cell Analysis Toolkit☆99Updated 2 months ago
- version 1 scripts for CODA☆51Updated last year
- SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention☆43Updated 3 months ago
- A pixel classification based multiplexed image segmentation pipeline☆100Updated last year
- ☆54Updated 7 months ago
- The Single-Cell Pathology Landscape of Breast Cancer☆27Updated 5 years ago
- An introduction to deepcell and deep learning☆153Updated 10 months ago
- QuPath extension to run StarDist nucleus detection☆46Updated 2 months ago
- ☆13Updated 2 years ago
- comseg☆24Updated 7 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 2 weeks ago
- IHC-image analysis workflow☆23Updated 7 years ago
- ☆39Updated last year
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆15Updated 3 years ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆37Updated last year
- ☆35Updated 2 months ago
- ☆31Updated 4 years ago