Alternatives and similar repositories for inspire:

Users that are interested in inspire are comparing it to the libraries listed below

• MIDA-group / py_alpha_amd_release
  Py-Alpha-AMD Registration Framework - Robust Image Registration - Public Release
  ☆20Updated 5 years ago
• jo-mueller / Slice2Volume
  Script that registers Histology slices to volumetric image data
  ☆11Updated last year
• SuperElastix / elastix-napari
  A napari plugin for itk-elastix
  ☆38Updated 10 months ago
• RUB-Bioinf / VesselExpress
  🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes
  ☆47Updated 11 months ago
• MIC-DKFZ / napari-nninteractive
  ☆65Updated last week
• vessap / vessap
  Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning
  ☆70Updated 3 years ago
• raacampbell / matlab_elastix
  MATLAB Elastix wrapper
  ☆27Updated 11 months ago
• MMV-Lab / mmv_im2im
  Python package for deep learning based image to image transformation
  ☆52Updated 11 months ago
• pyushkevich / greedy
  Very fast greedy diffeomorphic registration code
  ☆71Updated last week
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆32Updated last year
• MIDA-group / globalign
  Fast global mutual information-based rigid alignment in the Fourier domain
  ☆30Updated 9 months ago
• BrancoLab / imgreg2D
  2D image registration in python, using napari.
  ☆16Updated 3 years ago
• simeks / deform
  Efficient dense deformable image registration
  ☆26Updated last year
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆54Updated 2 weeks ago
• juglab / DenoiSeg
  Joint training of denoising and segmentation.
  ☆71Updated last year
• funalab / QCANet
  Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development
  ☆31Updated 2 years ago
• abnan / DRMIME
  DRMIME - Differentiable Mutual Information and Matrix Exponential for Multi-Resolution Image Registration
  ☆46Updated 5 years ago
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆57Updated 2 months ago
• GuillaumeMougeot / biom3d
  Easy Volumetric Segmentation with Deep Learning
  ☆26Updated last week
• peterhpark / neuroclear
  Neuroclear is a deep-learning-based Python module to train a deep neural network for the task of applying super-resolution to degraded ax…
  ☆29Updated last month
• neurodata / ndreg
  Perform image registration of 2D and 3D volumes using state-of-the-art deformable registration.
  ☆23Updated 5 years ago
• stegmaierj / Cellpose3D
  3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
  ☆35Updated 2 years ago
• kirchhausenlab / incasem
  Automated Segmentation of cellular substructures in Electron Microscopy
  ☆17Updated last month
• VolkerH / Lattice_Lightsheet_Deskew_Deconv
  Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data
  ☆25Updated 4 years ago
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆26Updated 2 months ago
• OSchoppe / AIMOS
  AI-enabled Mouse Organ Segmentation
  ☆12Updated 4 years ago
• arttumiettinen / pi2
  C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
  ☆54Updated last month
• InsightSoftwareConsortium / ITKTubeTK
  TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, …
  ☆52Updated last month
• Ajaxels / MIB2
  Microscopy Image Browser version 2 is a package for image processing, segmentation and visualization of multi-dimensional (2D-4D) microsc…
  ☆32Updated last week
• haesleinhuepf / napari-segment-blobs-and-things-with-membranes
  A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…
  ☆26Updated last week