Explore the FlyWire Connectome
☆157Sep 8, 2026Updated last month
Alternatives and similar repositories for codex
Users that are interested in codex are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools to work with the FlyWire connectome. Fully interoperable with navis.☆29Updated this week
- Analysis scripts for the network analyses of the Flywire connectome. Publication: "Network Statistics of the Whole-Brain Connectome of Dr…☆23Feb 14, 2026Updated 8 months ago
- Annotations for the FlyWire dataset.☆88Sep 29, 2026Updated last month
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆27Oct 21, 2026Updated last week
- This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.☆43Sep 5, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Support functions for analysis of Drosophila connectomes especially the FAFB-FlyWire whole brain☆14Updated this week
- ☆16Jul 20, 2026Updated 3 months ago
- ☆17Mar 26, 2024Updated 2 years ago
- Python library for analysis of neuroanatomical data.☆139Updated this week
- ☆43Sep 1, 2025Updated last year
- A leaky integrate-and-fire computational model of the Drosophila brain☆399Sep 14, 2024Updated 2 years ago
- A connectome-constrained deep mechanistic network (DMN) model of the fruit fly visual system in PyTorch.☆210Oct 14, 2026Updated 2 weeks ago
- 3D dense segmentation compression codec based on crack codes.☆18Oct 23, 2026Updated last week
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆29Feb 24, 2026Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Marching Cubes & Mesh Simplification on multi-label 3D images.☆76Aug 25, 2026Updated 2 months ago
- 🪰 Chat with 138,000 neurons — whole-brain fruit fly simulation with natural language interface and dopamine learning☆26Apr 2, 2026Updated 6 months ago
- Command line tool for registration of very large 3D volumes.☆16Jan 28, 2026Updated 9 months ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆46Oct 9, 2026Updated 3 weeks ago
- Scalable Optical Flow-based Image Montaging and Alignment☆103Oct 5, 2026Updated 3 weeks ago
- 3D/4D volumetric rendering of microscopy data☆28Oct 24, 2026Updated last week
- Example code for the NeuroAnatomy Toolbox (nat) R package☆10Nov 9, 2020Updated 5 years ago
- SEAMLeSS (under active development)☆11Aug 23, 2021Updated 5 years ago
- Multiplatform 3D numpy image browser based viewer with voxel painting.☆16Apr 21, 2026Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Analyzing Complex Networks with Python☆12Aug 24, 2025Updated last year
- View connectomic data stored in neuPrint☆50Oct 6, 2026Updated 3 weeks ago
- A contrastive learning framework for 3D electron microscopy data☆13Jan 17, 2023Updated 3 years ago
- Python client utilties for interacting with the neuPrint connectome analysis service☆89Oct 20, 2026Updated last week
- An interactive computing platform for studying the function of executable circuits constructed from fly brain data.☆120Sep 29, 2025Updated last year
- ☆40Updated this week
- R client utilities for interacting with the neuPrint connectome analysis service☆17Jun 2, 2026Updated 4 months ago
- Supplemental source code for Nern et al. 2025: "Connectome-driven neural inventory of a complete visual system" (https://doi.org/10.1038/…☆13Jun 17, 2025Updated last year
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆19Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Supplemental data for Berg et al. (2025)☆29Aug 7, 2026Updated 2 months ago
- Transforms for navis that enable mapping between different Drosophila template brains.☆37Oct 24, 2026Updated last week
- R package implementing the NBLAST neuron search algorithm, as an add-on for the NeuroAnatomy Toolbox (nat) R package.☆18Aug 24, 2026Updated 2 months ago
- Neuronal recordings and Foundation models☆14Jan 8, 2026Updated 9 months ago
- ☆68Oct 20, 2026Updated last week
- Universal API for Synthetic Biology parts, allowing for automation. Aggregates data from all major providers into a new Biobrick format, …☆13Apr 29, 2026Updated 6 months ago
- Block-wise operations for large nD volumes☆45Updated this week