murthylab / codex
Explore the FlyWire Connectome
☆50Updated 10 months ago
Alternatives and similar repositories for codex:
Users that are interested in codex are comparing it to the libraries listed below
- A Python interface to access neuroanatomical atlases☆141Updated this week
- A connectome-constrained deep mechanistic network (DMN) model of the fruit fly visual system in PyTorch.☆53Updated 2 months ago
- Block-wise task scheduling for large nD volumes.☆30Updated this week
- ☆45Updated 4 years ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆49Updated 3 weeks ago
- Segmentation of anatomical structures in a common coordinate space☆30Updated 3 weeks ago
- Tools to work with the FlyWire connectome. Fully interoperable with navis.☆13Updated last week
- ☆34Updated last year
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated 10 months ago
- End-to-end light-sheet image analysis for mouse brains, with DL training data generated in VR☆31Updated 2 weeks ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 4 years ago
- Automated 3D brain registration with support for multiple species and atlases.☆133Updated 2 weeks ago
- Pipelines and modules for processing optical physiology data☆11Updated 3 months ago
- Tools for distributed alignment of massive images☆81Updated last month
- A leaky integrate-and-fire computational model of the Drosophila brain☆45Updated 6 months ago
- Efficient cell detection in large images using cellfinder in napari☆23Updated last year
- A virtual optogenetics laboratory☆35Updated last year
- Tools for working with single-neuron morphological reconstructions☆21Updated 10 months ago
- Multichannel Igor Electrophysiology Suite☆26Updated this week
- Automated 3D cell detection in very large images☆195Updated this week
- QC and cell type assignment for patch-seq transcriptomics data☆19Updated 10 months ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆66Updated 3 weeks ago
- Guided Photometry Analysis in Python, a free and open-source FP analysis tool.☆72Updated last month
- A Fiji plugin that automatically quantify synapses from multi-channel fluorescence microscopy images.☆14Updated 6 months ago
- Live Mouse Tracker analysis☆27Updated this week
- 3D/4D volumetric rendering of microscopy data☆22Updated last month
- ☆51Updated 6 months ago
- IaC codebase for the NeuroCAAS Platform☆37Updated last year
- Create 3D/4D animations using a natural language-based syntax☆59Updated 2 years ago
- A package to analyse calcium imaging data recorded with the Miniscope.☆32Updated 2 years ago