murthylab / codexLinks
Explore the FlyWire Connectome
☆58Updated 8 months ago
Alternatives and similar repositories for codex
Users that are interested in codex are comparing it to the libraries listed below
Sorting:
- A connectome-constrained deep mechanistic network (DMN) model of the fruit fly visual system in PyTorch.☆99Updated 4 months ago
- End-to-end light-sheet image analysis for mouse brains, with DL training data generated in VR☆33Updated last month
- A Python interface to access neuroanatomical atlases☆170Updated last week
- Tools to work with the FlyWire connectome. Fully interoperable with navis.☆19Updated last week
- Segmentation of anatomical structures in a common coordinate space☆35Updated this week
- ☆46Updated 5 years ago
- Automated 3D cell detection in very large images☆223Updated this week
- The Zebrafish Activity Prediction Benchmark measures progress on the problem of predicting cellular-resolution neural activity throughout…☆62Updated 3 weeks ago
- Automated 3D brain registration with support for multiple species and atlases.☆143Updated this week
- 3D/4D volumetric rendering of microscopy data☆26Updated 2 months ago
- The codes, software, models, protocols, and etc. for building and using MINI2P to do the freely-moving recording and analysis. More detai…☆104Updated 2 years ago
- Annotations for the FlyWire dataset.☆33Updated 3 months ago
- A leaky integrate-and-fire computational model of the Drosophila brain☆73Updated last year
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆55Updated last year
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆56Updated this week
- Tools for distributed alignment of massive images☆92Updated this week
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Python library for analysis of neuroanatomical data.☆107Updated last week
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆113Updated 5 months ago
- Code for analyzing multi-electrode array recordings (spikes & LFP) for Trujillo, Gao, Negraes et al., 2019.☆16Updated 5 years ago
- Multichannel Igor Electrophysiology Suite☆29Updated this week
- Block-wise operations for large nD volumes☆43Updated last month
- ☆34Updated 8 months ago
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆114Updated 4 months ago
- code for reading and processing Allen Institute for Brain Science data☆374Updated 2 years ago
- Block-wise task scheduling for large nD volumes.☆33Updated 10 months ago
- Python package providing mesoscale connectivity models for mouse.☆39Updated last year
- Efficient cell detection in large images using cellfinder in napari☆22Updated 2 years ago
- Scalable Optical Flow-based Image Montaging and Alignment☆87Updated last week
- Live Mouse Tracker analysis☆35Updated this week