murthylab / codexLinks
Explore the FlyWire Connectome
☆52Updated 2 months ago
Alternatives and similar repositories for codex
Users that are interested in codex are comparing it to the libraries listed below
Sorting:
- ☆45Updated 5 years ago
- A Python interface to access neuroanatomical atlases☆156Updated this week
- Automated 3D cell detection in very large images☆216Updated last week
- A connectome-constrained deep mechanistic network (DMN) model of the fruit fly visual system in PyTorch.☆64Updated 6 months ago
- The codes, software, models, protocols, and etc. for building and using MINI2P to do the freely-moving recording and analysis. More detai…☆96Updated last year
- End-to-end light-sheet image analysis for mouse brains, with DL training data generated in VR☆33Updated 4 months ago
- A leaky integrate-and-fire computational model of the Drosophila brain☆57Updated 10 months ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated last year
- ☆34Updated 2 months ago
- Tools to work with the FlyWire connectome. Fully interoperable with navis.☆13Updated last month
- Automated 3D brain registration with support for multiple species and atlases.☆134Updated this week
- Segmentation of anatomical structures in a common coordinate space☆33Updated this week
- Openwater's Open-Source Neuromodulation Software☆22Updated last year
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated last week
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆52Updated last week
- ☆20Updated 5 years ago
- Activity Quantification and Analysis for molecular spatiotemporal signals☆27Updated 2 weeks ago
- Tool to help inspect NWB files for compliance with NWB Best Practices☆20Updated last week
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Efficient cell detection in large images using cellfinder in napari☆22Updated last year
- Image acquisition software for mesoSPIM light-sheet microscopes.☆43Updated last month
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆150Updated last week
- Python package for Braingeneers data loading, analysis, and IoT.☆19Updated last week
- QC and cell type assignment for patch-seq transcriptomics data☆20Updated last year
- A virtual optogenetics laboratory☆37Updated 2 years ago
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆88Updated 4 years ago
- Scalable Optical Flow-based Image Montaging and Alignment☆80Updated 3 weeks ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆41Updated 2 weeks ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆50Updated last year
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆103Updated last month