murthylab / codex

Related projects ⓘ

Alternatives and complementary repositories for codex

• navis-org / fafbseg-py
  Tools to work with the FlyWire connectome. Fully interoperable with navis.
  ☆13Updated 3 months ago
• StructuralNeurobiologyLab / SyConn
  Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
  ☆40Updated 4 months ago
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆27Updated 2 weeks ago
• brainglobe / cellfinder-napari
  Efficient cell detection in large images using cellfinder in napari
  ☆24Updated 10 months ago
• albert597 / TRAILMAP
  ☆45Updated 4 years ago
• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆28Updated this week
• erturklab / delivr_cfos
  End-to-end light-sheet image analysis for mouse brains, with DL training data generated in VR
  ☆28Updated 3 months ago
• connectome-neuprint / neuPrintExplorer
  View connectomic data stored in neuPrint
  ☆24Updated last week
• bene51 / 3Dscript
  Create 3D/4D animations using a natural language-based syntax
  ☆58Updated last year
• navis-org / pymaid
  Python library to interface with CATMAID servers. Fully interoperable with navis.
  ☆24Updated 2 months ago
• natverse / natverse
  Umbrella package to help install/load nat packages
  ☆10Updated 3 years ago
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆48Updated this week
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆74Updated 3 months ago
• oanegros / Blender_for_Biologists_2023
  ☆37Updated 3 months ago
• sanderslab / magellanmapper
  MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification
  ☆21Updated last week
• brainglobe / brainreg-napari
  Automated 3D brain registration in napari with support for multiple species and atlases.
  ☆15Updated 10 months ago
• piximi / piximi_old
  a free, open-source web app for annotating, training, and evaluating image understanding algorithms
  ☆25Updated 2 years ago
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 3 years ago
• idse / imsane
  ☆10Updated 3 years ago
• google-research / sofima
  Scalable Optical Flow-based Image Montaging and Alignment
  ☆54Updated last week
• htem / FANC_auto_recon
  Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset
  ☆12Updated last week
• guiwitz / naparimovie
  Create movies from series of key-frames in napari.
  ☆38Updated 3 years ago
• JaneliaSciComp / VVDViewer
  3D/4D volumetric rendering of microscopy data
  ☆20Updated 3 weeks ago
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆123Updated this week
• tractatus / wholebrain
  R package for segmentation, registration and generating web-based brain atlases from microscope images
  ☆86Updated 3 years ago
• PRNicovich / SerialMultiplexer
  Liquid handling robot for in situ serial multiplexing
  ☆18Updated 7 years ago
• royerlab / ultrack
  Cell tracking and segmentation software
  ☆93Updated last week
• AllenInstitute / MicronsBinder
  A collection of notebooks to provide examples of using Microns-explorer.org datasets
  ☆33Updated 5 months ago
• brainglobe / brainglobe-napari-io
  Read and write files from the BrainGlobe neuroanatomy suite
  ☆13Updated last week