murthylab / codex
Explore the FlyWire Connectome
☆47Updated 8 months ago
Alternatives and similar repositories for codex:
Users that are interested in codex are comparing it to the libraries listed below
- Segmentation of anatomical structures in a common coordinate space☆30Updated this week
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆49Updated this week
- ☆45Updated 4 years ago
- A Python interface to access neuroanatomical atlases☆128Updated this week
- Tools to work with the FlyWire connectome. Fully interoperable with navis.☆13Updated 5 months ago
- Block-wise task scheduling for large nD volumes.☆29Updated 3 months ago
- Automated 3D cell detection in very large images☆182Updated this week
- QC and cell type assignment for patch-seq transcriptomics data☆17Updated 8 months ago
- ☆32Updated last year
- End-to-end light-sheet image analysis for mouse brains, with DL training data generated in VR☆30Updated 5 months ago
- Efficient cell detection in large images using cellfinder in napari☆23Updated last year
- Tools for working with single-neuron morphological reconstructions☆21Updated 9 months ago
- Automated 3D brain registration with support for multiple species and atlases.☆129Updated this week
- A connectome-constrained deep mechanistic network (DMN) model of the fruit fly visual system in PyTorch.☆48Updated this week
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated 8 months ago
- A collection of notebooks to provide examples of using Microns-explorer.org datasets☆34Updated 8 months ago
- 3D/4D volumetric rendering of microscopy data☆21Updated last month
- Software package for neuron reconstruction and visualization