The Zebrafish Activity Prediction Benchmark measures progress on the problem of predicting cellular-resolution neural activity throughout an entire vertebrate brain.
☆65Feb 27, 2026Updated this week
Alternatives and similar repositories for zapbench
Users that are interested in zapbench are comparing it to the libraries listed below
Sorting:
- A flexible pipeline for analyzing zebrafish locomotion☆12May 28, 2025Updated 9 months ago
- Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery☆14Apr 10, 2025Updated 10 months ago
- ☆13Aug 13, 2017Updated 8 years ago
- A package for processing diSPIM images with GPU implementation☆14Dec 10, 2021Updated 4 years ago
- focused ultrasound toolbox☆18Updated this week
- A collection of 3D image processing functions and applications with GPU implementation☆14Feb 26, 2021Updated 5 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆159Feb 11, 2026Updated 2 weeks ago
- Paint segmentations directly to on-disk/remote zarr arrays☆15Jun 26, 2024Updated last year
- Connectome-constrained Latent Variable Model of Whole-brain Neural Activity, ICLR 2022☆18Apr 26, 2022Updated 3 years ago
- 🌌 Towards a Digital Pluriverse: “a world where many worlds may fit”☆15Feb 20, 2022Updated 4 years ago
- The SIM-ONE Framework: World's first architecture for governed cognition. Achieves AGI-level capabilities through 9-protocol cognitive go…☆16Oct 12, 2025Updated 4 months ago
- Openwater's Open-Source Neuromodulation Hardware☆22Mar 9, 2024Updated last year
- A connectome-constrained deep mechanistic network (DMN) model of the fruit fly visual system in PyTorch.☆101Updated this week
- ☆22Jan 6, 2026Updated last month
- Combined Repos from DAIN and Zooming SlowMo☆21Jul 9, 2023Updated 2 years ago
- ☆18Dec 8, 2022Updated 3 years ago
- Openwater's Open-Source Neuromodulation Software☆26Jul 11, 2024Updated last year
- Benchmark of online PCA algorithms☆22Sep 18, 2018Updated 7 years ago
- Code accompanying Inferring stochastic low-rank RNNs from neural data. @matthijspals☆26Jan 26, 2026Updated last month
- Code and data for "Does Spatial Cognition Emerge in Frontier Models?"☆27Apr 18, 2025Updated 10 months ago
- A generalised Gaussian process method for learning vector fields over non-Euclidean domains. Particularly useful for EEG data analysis an…☆25Oct 28, 2024Updated last year
- Basic integration for Slack notifications for Matlab.☆21Nov 20, 2014Updated 11 years ago
- IBL foundation model☆29Dec 2, 2024Updated last year
- Z-Brain Viewer and Analysis Scripts for MAP-Mapping☆25Apr 11, 2025Updated 10 months ago
- Official PyTorch implementation of Bispectral Neural Networks, ICLR 2023☆26Mar 20, 2025Updated 11 months ago
- Caffe model zoo and scripts☆24Apr 8, 2016Updated 9 years ago
- Official implementation for "Sparse Concept Bottleneck Models: Gumbel Tricks in Contrastive Learning"☆12Jun 20, 2025Updated 8 months ago
- mathematical methods for neuroscience and machine learning☆25Jul 30, 2019Updated 6 years ago
- B-Spline Density Estimation Library - nonparametric density estimation using B-Spline density estimator from univariate sample.☆16Aug 22, 2021Updated 4 years ago
- Code for COVID19 CT labeling. Submillimetric CT dataset provided as well.☆13Feb 16, 2021Updated 5 years ago
- T2N is an extension of the TREES toolbox providing an interface between Matlab and the compartmental modeling environment NEURON. It w…☆10Sep 3, 2019Updated 6 years ago
- Unofficial implementation of EDM2: Analyzing and Improving the Training Dynamics of Diffusion Models☆12Mar 17, 2024Updated last year
- spike extraction from calcium signals (Deneux et al., 2016)☆35Apr 9, 2020Updated 5 years ago
- ☆37Feb 4, 2022Updated 4 years ago
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆34Oct 17, 2023Updated 2 years ago
- Segmentation of anatomical structures in a common coordinate space☆36Updated this week
- ConvRNN Model Zoo: ImageNet pre-trained convolutional recurrent neural networks☆38Oct 27, 2023Updated 2 years ago
- [ICRA 2026] StereoAdapter: Adapting Stereo Depth Estimation to Underwater Scenes☆20Feb 17, 2026Updated 2 weeks ago
- Official Implementation of NEDS☆15Sep 17, 2025Updated 5 months ago