msettles / dbcAmpliconsLinks
Analysis of Double Barcoded Illumina Amplicon Data
☆9Updated 5 years ago
Alternatives and similar repositories for dbcAmplicons
Users that are interested in dbcAmplicons are comparing it to the libraries listed below
Sorting:
- PacBio hybrid error correction through iterative short read consensus☆61Updated 6 years ago
- Overlap assembler of paired-end DNA sequences generated by Illumina☆22Updated 8 years ago
- Manipulate FASTA files☆30Updated 10 years ago
- de novo virus assembler of Illumina paired reads☆56Updated 4 years ago
- Rank-based Gene Ontology analysis of gene expression data☆42Updated 2 years ago
- A tool for Racon polishing of miniasm assemblies☆77Updated 2 months ago
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆95Updated 3 months ago
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆60Updated 2 years ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Updated 9 years ago
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆81Updated 4 years ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆59Updated 6 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago
- Synteny Imager☆63Updated 2 weeks ago
- ☆83Updated last year
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆20Updated 4 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Implementation of the multiple sequential markovian coalescent☆89Updated last week
- scripts to parse IrysView output☆39Updated 9 years ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆81Updated 9 years ago
- 🔗Genome assembly scaffolder using minimizer graphs☆84Updated 10 months ago
- GBSX: a toolkit for experimental design and demultiplexing genotyping by sequencing experiments☆18Updated 8 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- SURPI☆85Updated 9 years ago
- MITObim - mitochondrial baiting and iterative mapping☆113Updated 4 years ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆85Updated 7 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆47Updated 8 years ago
- ✏️ Genome assembly polishing & SNV detection☆69Updated last month
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago