msettles / dbcAmpliconsLinks
Analysis of Double Barcoded Illumina Amplicon Data
☆9Updated 5 years ago
Alternatives and similar repositories for dbcAmplicons
Users that are interested in dbcAmplicons are comparing it to the libraries listed below
Sorting:
- PacBio hybrid error correction through iterative short read consensus☆61Updated 6 years ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Updated 9 years ago
- Overlap assembler of paired-end DNA sequences generated by Illumina☆22Updated 8 years ago
- mytax is a tool for building custom taxonomies, useful for nucleotide sequence classification☆11Updated 4 months ago
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆59Updated 2 years ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆59Updated 5 years ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆81Updated 9 years ago
- SURPI☆84Updated 9 years ago
- de novo virus assembler of Illumina paired reads☆56Updated 4 years ago
- Rank-based Gene Ontology analysis of gene expression data☆42Updated 2 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated 2 years ago
- A tool for Racon polishing of miniasm assemblies☆76Updated last month
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆94Updated 2 months ago
- ☆83Updated last year
- GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click…☆83Updated 7 months ago
- Synteny Imager☆63Updated 10 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 3 years ago
- Automated de novo assembly of whole chloroplast genomes.☆46Updated 9 months ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆90Updated last week
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆115Updated last year
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆80Updated 4 years ago
- ☆17Updated 7 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- ☆33Updated 7 years ago
- Workflow for detecting genome-wide horizontal gene transfers☆10Updated 7 years ago
- Tool for quick offline batch conversion of Genbank IDs or accessions to taxonomy strings☆14Updated last year