isdneuroimaging / mmqt
Microglia morphology quantification tool
☆12Updated 3 years ago
Alternatives and similar repositories for mmqt:
Users that are interested in mmqt are comparing it to the libraries listed below
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆16Updated 3 months ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆89Updated 2 months ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆45Updated last year
- ☆11Updated 8 years ago
- Repository for BehaviorDEPOT pipeline app files and source code☆36Updated 3 months ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆25Updated 2 years ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated 8 months ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Updated 10 months ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆20Updated 2 years ago
- COmmon COordinate FRAMEwork in R☆36Updated 4 years ago
- Histology processing☆65Updated 10 months ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆34Updated this week
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆52Updated 4 years ago
- Fiber Photometry Modular Analysis Tool Suite☆36Updated 3 years ago
- ☆32Updated last year
- ☆51Updated 5 months ago
- ☆45Updated 4 years ago
- R Scripts to analyze deep lab cut point data and related data☆64Updated 2 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆61Updated last year
- Automatic Mobility Based Behavioral Quantification ( Forced Swim Test, Tail Suspension Test )☆17Updated 3 months ago
- QC and cell type assignment for patch-seq transcriptomics data☆17Updated 8 months ago
- ☆19Updated 11 months ago
- ☆18Updated 2 years ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆49Updated this week
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆24Updated last year
- A GUI and library for doing multi-fiber photometry☆18Updated 7 years ago
- Fiber photometry analysis☆22Updated last month
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆62Updated 3 months ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆59Updated 7 months ago