isdneuroimaging / mmqt
Microglia morphology quantification tool
☆13Updated 3 years ago
Alternatives and similar repositories for mmqt:
Users that are interested in mmqt are comparing it to the libraries listed below
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆16Updated 3 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆36Updated 4 months ago
- Histology processing☆65Updated 10 months ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆49Updated this week
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆20Updated 2 years ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆25Updated 2 years ago
- ☆11Updated 8 years ago
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Updated 11 months ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆52Updated 4 years ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆54Updated 9 months ago
- ☆45Updated 4 years ago
- ☆18Updated 3 years ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆46Updated last year
- COmmon COordinate FRAMEwork in R☆36Updated 4 years ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆36Updated last week
- R Scripts to analyze deep lab cut point data and related data☆65Updated 2 years ago
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆14Updated 2 years ago
- Fiber Photometry Modular Analysis Tool Suite☆36Updated 3 years ago
- A Python interface to access neuroanatomical atlases☆129Updated this week
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆91Updated 3 months ago
- QC and cell type assignment for patch-seq transcriptomics data☆18Updated 9 months ago
- ☆33Updated last year
- ☆19Updated last year
- Modified Python 3.0 implementation of MotionMapper (https://github.com/gordonberman/MotionMapper)☆28Updated 8 months ago
- ☆18Updated 2 years ago
- Guided Photometry Analysis in Python, a free and open-source FP analysis tool.☆70Updated 3 weeks ago
- ☆52Updated 5 months ago
- A GUI and library for doing multi-fiber photometry☆18Updated 7 years ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆24Updated last year