isdneuroimaging / mmqt

Related projects: ⓘ

• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆41Updated last year
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆34Updated last year
• JingyiGF / HERBS
  ☆18Updated 7 months ago
• PolarBean / DeepSlice
  A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
  ☆76Updated 2 weeks ago
• yu-lab-vt / AQuA
  An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
  ☆50Updated 4 months ago
• petersaj / AP_histology
  Histology processing
  ☆61Updated 6 months ago
• open-ephys / Bonsai.Miniscope
  Bonsai package for controlling headborne, calcium imaging miniscopes
  ☆12Updated 6 months ago
• PrincetonUniversity / BrainPipe
  ☆18Updated 2 years ago
• easy-electrophysiology / easy-electrophysiology-analysis
  Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)
  ☆15Updated 11 months ago
• wildrootlab / SHARCQ
  Tools to register histological section images and cell count locations to mouse brain atlas
  ☆24Updated 2 years ago
• ryhattori / PatchWarp
  Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.
  ☆24Updated 9 months ago
• Whitlock-Group / HERBS
  ☆51Updated 3 weeks ago
• DeepLabCut / napari-deeplabcut
  a napari plugin for labeling and refining keypoint data within DeepLabCut projects
  ☆52Updated 3 months ago
• VirtualBrainLab / Pinpoint
  Multi-probe trajectory planning in an intuitive 3D environment
  ☆42Updated last week
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆34Updated 2 weeks ago
• leomol / FPA
  Fiber photometry analysis
  ☆19Updated 2 months ago
• ETHZ-INS / DLCAnalyzer
  R Scripts to analyze deep lab cut point data and related data
  ☆60Updated last year
• djamesbarker / pMAT
  Fiber Photometry Modular Analysis Tool Suite
  ☆32Updated 3 years ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆91Updated 2 months ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆58Updated 9 months ago
• lahammond / BrainJ
  Fiji pipeline for automated serial section reconstruction and mouse brain analysis.
  ☆27Updated 11 months ago
• dterstege / FASTMAP
  ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing
  ☆18Updated 2 years ago
• nel-lab / FIOLA
  ☆29Updated 11 months ago
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆49Updated 4 years ago
• talialerner / Photometry-Analysis-Shared
  ☆11Updated 8 years ago
• vsnnlab / AMaSiNe
  ☆14Updated last year
• simonarvin / braincoordinator
  Open-source stereotaxic coordinator
  ☆14Updated last year
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆61Updated 3 weeks ago
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆43Updated last year
• albert597 / TRAILMAP
  ☆45Updated 4 years ago