Alternatives and similar repositories for PPI-Miner

Users that are interested in PPI-Miner are comparing it to the libraries listed below

• Furman-Lab / PatchMAN
  ☆27Updated last month
• KosinskiLab / alphafold3x
  Explicit crosslinks in AlphaFold 3
  ☆23Updated 8 months ago
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆29Updated 5 months ago
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆42Updated 6 months ago
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆48Updated 7 months ago
• wendao / CAGE-Prox
  Computer aided proximal decaging as a universal strategy for temporal protein activation
  ☆24Updated 6 months ago
• JieDuTQS / PPDOCK
  ☆22Updated 7 months ago
• rochoa85 / PepFun
  Bioinformatics and Cheminformatics protocols for peptide analysis
  ☆43Updated 2 years ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆54Updated 3 months ago
• DeepRank / PSSMGen
  Generates consistent PSSM and/or PDB files for protein-protein complexes
  ☆20Updated 3 years ago
• ohuelab / MEGADOCK-on-Colab
  MEGADOCK on Google Colaboratory
  ☆20Updated 2 years ago
• jbderoo / PAbFold
  Epitope Prediction Pipeline and analysis tools built around AlphaFold 2
  ☆20Updated last year
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆34Updated 2 years ago
• JinyuanSun / DDGScan
  DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein
  ☆49Updated last year
• AspirinCode / AlphaPPImd
  Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks
  ☆32Updated last year
• luwei0917 / AlphaFold3_PPI
  ☆15Updated last year
• debbiemarkslab / nanobody-polyreactivity
  Polyreactivity Website
  ☆17Updated 2 years ago
• LLNL / CRPCA
  Computationally Restoring the Potency of a Clinical Antibody
  ☆18Updated last year
• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆35Updated 7 years ago
• SLx64 / af3cli
  A command-line interface and Python library for generating AlphaFold3 input files.
  ☆38Updated 6 months ago
• LiuHuayang27 / TransSAFP
  ☆28Updated 8 months ago
• HPCLab-933 / Vina-CUDA
  Vina-CUDA: further accelerating Autodock Vina with in-depth utilization of GPU hardware characteristics
  ☆40Updated 5 months ago
• haddocking / haddock-tools
  Set of useful HADDOCK utility scripts
  ☆56Updated 2 months ago
• csi-greifflab / manuscript_insilico_antibody_generation
  ☆23Updated 4 years ago
• t03i / FlatProt
  A tool for 2D protein visualization aimed at improving the comparability of protein structures through standardized 2D visualizations.
  ☆19Updated 4 months ago
• zeysun / AntiBMPNN
  Repo of AntiBMPNN project for antibody sequence design.
  ☆21Updated 6 months ago
• guyuehuo / opendock
  ☆51Updated last year
• rochoa85 / PepFun2
  PepFun 2.0: improved protocols for the analysis of natural and modified peptides
  ☆25Updated 2 years ago
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆31Updated last year
• samuelmurail / af_analysis
  Analysis of alphafold and colabfold results
  ☆32Updated this week