Alternatives and similar repositories for PPI-Miner

Users that are interested in PPI-Miner are comparing it to the libraries listed below

• Furman-Lab / PatchMAN
  ☆27Updated last month
• DeepRank / PSSMGen
  Generates consistent PSSM and/or PDB files for protein-protein complexes
  ☆20Updated 3 years ago
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆29Updated 4 months ago
• HPCLab-933 / Vina-CUDA
  Vina-CUDA: further accelerating Autodock Vina with in-depth utilization of GPU hardware characteristics
  ☆38Updated 4 months ago
• JieDuTQS / PPDOCK
  ☆22Updated 6 months ago
• haddocking / fcc
  Fraction of Common Contacts Clustering Algorithm for Protein Structures
  ☆27Updated 4 years ago
• jbderoo / PAbFold
  Epitope Prediction Pipeline and analysis tools built around AlphaFold 2
  ☆20Updated last year
• rochoa85 / PepFun
  Bioinformatics and Cheminformatics protocols for peptide analysis
  ☆43Updated 2 years ago
• KosinskiLab / alphafold3x
  Explicit crosslinks in AlphaFold 3
  ☆23Updated 7 months ago
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆42Updated 5 months ago
• AspirinCode / AMPTrans-lstm
  Application of deep generative model discovers novel and diverse functional peptides against microbial resistance
  ☆11Updated 2 years ago
• haddocking / HADDOCK-antibody-antigen
  Material to run the HADDOCK antibody-antigen modelling protocol
  ☆22Updated last month
• rochoa85 / PepFun2
  PepFun 2.0: improved protocols for the analysis of natural and modified peptides
  ☆25Updated 2 years ago
• csi-greifflab / manuscript_insilico_antibody_generation
  ☆23Updated 4 years ago
• guyuehuo / opendock
  ☆51Updated 11 months ago
• luwei0917 / AlphaFold3_PPI
  ☆15Updated last year
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆34Updated last year
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆47Updated 6 months ago
• minmarg / gtalign_alpha
  GTalign, high-performance protein structure alignment, superposition and search
  ☆51Updated 2 months ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆54Updated 3 months ago
• csi-greifflab / developability_profiling
  ☆25Updated 2 months ago
• LLNL / CRPCA
  Computationally Restoring the Potency of a Clinical Antibody
  ☆18Updated last year
• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆34Updated 7 years ago
• anazhmetdin / siRNAdesigner
  python script that picks suitable targets for siRNA with off-target optimization
  ☆17Updated 4 years ago
• tianlt / deepdirect
  ☆17Updated last year
• NRGlab / Surfaces
  ☆15Updated last month
• Zuttergutao / GMXAnalysis
  For the purpose of post progressing of MD carried by gromacs
  ☆22Updated 4 months ago
• SLx64 / af3cli
  A command-line interface and Python library for generating AlphaFold3 input files.
  ☆37Updated 5 months ago
• SNU-CSSB / RF2-Lite
  ☆30Updated last year
• wendao / CAGE-Prox
  Computer aided proximal decaging as a universal strategy for temporal protein activation
  ☆24Updated 5 months ago