☆30Mar 21, 2026Updated 7 months ago
Alternatives and similar repositories for Squidiff_reproducibility
Users that are interested in Squidiff_reproducibility are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆191Jan 30, 2026Updated 9 months ago
- this is the script used to compare single-cell perturbation response prediction models.☆10Jun 12, 2026Updated 4 months ago
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆11Mar 11, 2020Updated 6 years ago
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆19Oct 10, 2026Updated 3 weeks ago
- ☆23May 12, 2026Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆55Jun 16, 2025Updated last year
- [ICLR 2026] scDFM: Distributional Flow Matching for Robust Single-Cell Perturbation Prediction☆65Sep 28, 2026Updated last month
- Improved bioinformatic pipeline to identify and quantify circRNA expression from RNA-seq data by combining multiple circRNA detection met…☆11Nov 7, 2025Updated 11 months ago
- Python interface to the MRC IEU OpenGWAS API☆16Mar 6, 2026Updated 7 months ago
- Single-cell perturbation effects prediction benchmark☆107Oct 22, 2026Updated last week
- ☆11Apr 1, 2024Updated 2 years ago
- ☆11Jul 17, 2026Updated 3 months ago
- A human universal senescence index to evaluate celluar senescence☆44Sep 11, 2025Updated last year
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆420Feb 1, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SenePy is a set of tools to score single-cells based on their expression of cell-specific senescence markers. Please see the following pu…☆60Jan 30, 2025Updated last year
- A repository for reproducing experiments from the TxPert paper☆55Mar 25, 2026Updated 7 months ago
- A generative model to predict gene expression dynamics, cell population changes, and perturbation outcomes from time-series single-cell d…☆15Apr 17, 2025Updated last year
- MixFlow: Mixture-Conditioned Flow Matching for Out-of-Distribution Generalization☆13Feb 13, 2026Updated 8 months ago
- SuperCell for Cytometry data☆13Oct 14, 2025Updated last year
- MapQC - a metric for the evaluation of single-cell query-to-reference mappings☆12Updated this week
- ☆10Dec 11, 2024Updated last year
- Nature Computational Science: Predicting drug responses of unseen cell types through transfer learning with foundation models☆43Feb 2, 2026Updated 8 months ago
- ☆10Aug 2, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…☆92Dec 13, 2024Updated last year
- CRCmapper: map core regulatory circuitry☆14Nov 23, 2020Updated 5 years ago
- physics-informed neural network based method for solving single-cell population dynamics☆18Sep 19, 2026Updated last month
- Code accompanying the manuscript "Broad transcriptomic dysregulation across the cerebral cortex in ASD".☆15Aug 10, 2022Updated 4 years ago
- A causal implicit generative model for simulating single-cell RNA-seq data guided by a gene regulatory network 🧬☆40Jul 28, 2025Updated last year
- SIDISH: Semi-supervised Iterative Deep Learning for Identifying Single-cell High-risk Populations☆26Jul 30, 2026Updated 3 months ago
- Code for major analyses in "Spatially resolved multi-omics of human metabolic dysfunction-associated steatotic liver disease" paper by Zi…☆17Nov 25, 2025Updated 11 months ago
- Trends in single cell papers☆17Sep 23, 2024Updated 2 years ago
- Package to preprocess ontologies and train OntoVAE models.☆16Jan 7, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- CCCvelo: Decoding dynamic cell-cell communication-driven cell state transitions in spatial transcriptomics☆13Sep 14, 2026Updated last month
- ☆42Sep 21, 2026Updated last month
- ☆32Apr 23, 2026Updated 6 months ago
- Evolvable geometric landscape model☆13Updated this week
- Python package for CS-CORE, a statistical method for cell-type-specific co-expression inference from single cell RNA-sequencing data☆15Dec 11, 2023Updated 2 years ago
- Repository containing the code to reproduce the analyses contained in the MEFISTO manuscript☆13Jul 27, 2021Updated 5 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆28Jan 25, 2022Updated 4 years ago