Alternatives and similar repositories for GMrepoProgrammableAccess:

Users that are interested in GMrepoProgrammableAccess are comparing it to the libraries listed below

• louiejtaylor / grabseqs
  A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
  ☆105Updated 5 years ago
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆90Updated 3 years ago
• linsalrob / fastq-pair
  Match up paired end fastq files quickly and efficiently.
  ☆145Updated 10 months ago
• hzi-bifo / RiboDetector
  Accurate and rapid RiboRNA sequences Detector based on deep learning
  ☆106Updated last year
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆69Updated 3 years ago
• biocore / tcga
  Microbial analysis in TCGA data
  ☆90Updated last year
• ohmeta / metapi
  A general metagenomics data mining system focus on robust microbiome research
  ☆57Updated 6 months ago
• bhattlab / kraken2_classification
  Snakemake workflow for metagenomic classification with Kraken2
  ☆65Updated last year
• grimmlab / MicrobiomeBestPracticeReview
  Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
  ☆115Updated 10 months ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆66Updated last month
• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆148Updated last month
• bioinfomaticsCSU / deepsignal
  Detecting methylation using signal-level features from Nanopore sequencing reads
  ☆113Updated last year
• PacificBiosciences / pb-assembly
  PacBio Assembly Tool Suite: Reads in ⇨ Assembly out
  ☆116Updated 4 years ago
• HadrienG / tutorials
  Various bioinformatics tutorials
  ☆59Updated last year
• shenwei356 / perfect-bioinformatic-tools
  What should perfect bioinformatic tools be like?
  ☆114Updated last week
• tseemann / PEAR
  Pair-End AssembeR
  ☆32Updated 10 years ago
• transcript / samsa2
  SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…
  ☆57Updated last year
• Sydney-Informatics-Hub / Shotgun-Metagenomics-Analysis
  Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more
  ☆29Updated last year
• ParkinsonLab / Metatranscriptome-Workshop
  Metatranscriptomics Tutorial
  ☆62Updated last year
• biocorecrg / master_of_pores
  Nextflow pipeline for analysis of direct RNA Nanopore reads
  ☆101Updated 3 months ago
• Sentieon / sentieon-scripts
  Helper scripts for biological data processing from Sentieon
  ☆64Updated 5 months ago
• Juke34 / awesome-awesomeness-bioinformatics
  A curated list of awesome curated lists of awesome softwares and resources in bioinformatics and affiliated areas
  ☆40Updated 2 weeks ago
• karkman / MetagenomeCourse2019
  Course material for the metagenomics course
  ☆43Updated 3 years ago
• mlbendall / telescope
  Quantification of transposable element expression using RNA-seq
  ☆65Updated last year
• biobakery / kneaddata
  Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.
  ☆117Updated 2 weeks ago
• mritchielab / long_read_tools
  A catalogue of available long read sequencing data analysis tools
  ☆77Updated 3 weeks ago
• MicrobeLab / DeepMicrobes
  DeepMicrobes: taxonomic classification for metagenomics with deep learning
  ☆92Updated 2 years ago
• iprada / Circle-Map
  A method for circular DNA detection based on probabilistic mapping of ultrashort reads
  ☆62Updated 8 months ago
• nadegeguiglielmoni / genome_assembly_tools
  List of genome assembly tools
  ☆63Updated this week
• fanglab / nanodisco
  nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…
  ☆69Updated 2 years ago