code for Gogleva et al manuscript
☆46Nov 30, 2022Updated 3 years ago
Alternatives and similar repositories for skywalkR
Users that are interested in skywalkR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Comparison of single cell normalization strategies☆11Aug 13, 2021Updated 4 years ago
- The vignette provided has a basic sketch of the steps we interactively will go through to build a package with devtools, explains version…☆11Jul 29, 2020Updated 5 years ago
- ☆11Jun 26, 2020Updated 5 years ago
- Source code and data files for "PEMT: A patent enrichment tool with applicability in drug discovery"☆17Jan 27, 2025Updated last year
- Python package for matrix storage and operations on hetnets☆14Mar 30, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- UNCURL is a tool for single cell RNA-seq data analysis.☆15Jun 27, 2022Updated 3 years ago
- ☆16Jul 9, 2024Updated last year
- Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering,…☆29Mar 16, 2026Updated 2 months ago
- Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements☆34Jan 5, 2026Updated 4 months ago
- A pipeline creation tool using Snakemake☆13Apr 24, 2026Updated last month
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆29Feb 9, 2025Updated last year
- ☆15Jun 8, 2022Updated 3 years ago
- A fast and programmatic MELODI☆17Apr 16, 2024Updated 2 years ago
- ☆17May 15, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Source code and data files for manuscript titled "Pharmaceutical patent landscaping: A novel approach to understand patents from the drug…☆15Nov 27, 2023Updated 2 years ago
- Differential Hi-C Data Analysis Workshop https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/cpbi.76☆15Apr 10, 2021Updated 5 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 5 years ago
- In Silico Prediction of Novel Therapeutic Targets Using Gene – Disease Association Data☆18Jan 19, 2018Updated 8 years ago
- Synthetic lethality (SL) is a promising gold mine for the discovery of anti-cancer drug targets. KG4SL is the first graph neural network …☆33Aug 1, 2023Updated 2 years ago
- Rmarkdown / compiled html files for human reprogramming dataset analysis☆18Jun 11, 2020Updated 5 years ago
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆74Apr 13, 2026Updated last month
- ☆10Dec 3, 2019Updated 6 years ago
- Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap☆19Mar 7, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Molecular Benchmark for Disease and Target Based Machine Learning☆25Feb 9, 2022Updated 4 years ago
- ☆12Dec 29, 2020Updated 5 years ago
- Imperial Chemistry department's introduction to programming using Python☆10Jun 7, 2025Updated 11 months ago
- a place for GA4GH-related wiki pages☆17Aug 3, 2017Updated 8 years ago
- Functional enrichment analysis of high-throughput omics data☆20Jan 6, 2025Updated last year
- Source code and data repository for "Ensembles of knowledge graph embedding models improve predictions for drug discovery"☆20Jan 17, 2024Updated 2 years ago
- Readings for "A Unified View of Relational Deep Learning for Drug Pair Scoring." (IJCAI 2022)☆99Aug 7, 2022Updated 3 years ago
- Auxiliary variable Markov chain Monte Carlo methods☆10Oct 24, 2017Updated 8 years ago
- Discovering novel cell types across heterogenous single-cell experiments☆123Dec 8, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- (differentiable) gradient-based optimization on a chemical graph for de novo molecule design/optimization (ICLR 2022)☆31Jul 17, 2023Updated 2 years ago
- Codebase for BioPathNet to predict links in biomedical knowledge graphs☆39Feb 19, 2026Updated 3 months ago
- Source code and data for "Causal reasoning over knowledge graphs leveraging drug-perturbed and disease-specific transcriptomic signatures…☆19Jul 3, 2024Updated last year
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆22Jun 6, 2025Updated 11 months ago
- Harvard FAS informatics scRNAseq workshop website☆39Aug 8, 2019Updated 6 years ago
- A Knowledge Graph for Relational Learning On Biological Data☆109Mar 21, 2024Updated 2 years ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆24Jul 2, 2025Updated 10 months ago