AstraZeneca / skywalkR
code for Gogleva et al manuscript
☆45Updated 2 years ago
Alternatives and similar repositories for skywalkR:
Users that are interested in skywalkR are comparing it to the libraries listed below
- Network-based project to explore gene connectivity through biological scales☆23Updated 6 months ago
- Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks☆24Updated this week
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆24Updated 2 months ago
- Biological Network Integration using Convolutions☆62Updated last year
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆40Updated 11 months ago
- ☆21Updated 5 months ago
- PlaNet: Predicting population response to drugs via clinical knowledge graph☆29Updated last month
- A Python package for drug discovery by analyzing causal paths on multiscale networks☆26Updated 10 months ago
- ☆66Updated last year
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)☆21Updated 3 years ago
- Orientation of the protein-protein interaction network using network diffusion techniques☆15Updated 4 years ago
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆61Updated last year
- Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"☆26Updated last year
- ☆18Updated 10 months ago
- Target prioritization using network representation learning☆11Updated 3 years ago
- Processed Cell Painting Data for the LINCS Drug Repurposing Project☆28Updated 2 years ago
- SPECTRA: Spectral framework for evaluation of biomedical AI models☆38Updated last month
- Similarity search in heterogeneous knowledge graphs using meta paths.☆25Updated 2 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- ☆10Updated last year
- ☆19Updated 4 years ago
- A deep learning framework for high-throughput mechanism-driven phenotype screening☆49Updated 4 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- ☆17Updated 7 months ago
- A Python toolkit for setting up benchmarking dataset using biomedical networks☆22Updated last month
- StarGazer is a tool designed for rapidly assessing drug repositioning opportunities. It combines multi-source, multi-omics data with a no…☆35Updated last year
- Source code and data repository for "Ensembles of knowledge graph embedding models improve predictions for drug discovery"☆20Updated last year
- A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.☆32Updated 9 months ago
- Bioinformatics 2020: Graph Neural Networks for DNA Sequence Classification☆33Updated 4 years ago
- biochem4j: integrated and extensible biochemical knowledge through graph databases☆12Updated 7 years ago