Alternatives and similar repositories for DeSIDE-DDI:

Users that are interested in DeSIDE-DDI are comparing it to the libraries listed below

• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 3 years ago
• mims-harvard / PDGrapher
  Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks
  ☆24Updated 4 months ago
• MaayanLab / L1000toRNAseq
  ☆15Updated 2 years ago
• babaling / DRPreter
  [IJMS 2022] DRPreter: Interpretable Anticancer Drug Response Prediction Using Knowledge-Guided Graph Neural Networks and Transformer
  ☆10Updated 2 years ago
• s6juncheng / BERTMHC
  MHC-peptide class II interaction prediction, binding, presentation
  ☆21Updated 3 years ago
• PaccMann / paccmann_predictor
  PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…
  ☆51Updated 11 months ago
• Genentech / iterative-perturb-seq
  Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors
  ☆40Updated 11 months ago
• chembl / tractability_pipeline_v2
  Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
  ☆23Updated 2 months ago
• dmis-lab / ReSimNet
  Implementation of ReSimNet for drug response similarity prediction
  ☆40Updated last year
• mims-harvard / SPECTRA
  SPECTRA: Spectral framework for evaluation of biomedical AI models
  ☆38Updated last month
• mims-harvard / PINNACLE
  Contextual AI models for single-cell protein biology
  ☆84Updated 2 months ago
• papercode-for-cheung / DeepMGT-DTI
  ☆16Updated 3 years ago
• pth1993 / DeepCE
  A deep learning framework for high-throughput mechanism-driven phenotype screening
  ☆49Updated 4 years ago
• dohlee / chromoformer
  The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)
  ☆35Updated last year
• Emad-COMBINE-lab / MARSY
  Code for the MARSY model with sample input and response. I included figures to show the architecture and format of input samples.
  ☆12Updated 2 years ago
• GIST-CSBL / HoTS
  HoTS: Sequence-based prediction of binding regions and drug-target interactions.
  ☆26Updated 2 years ago
• TeamSundar / TransDTI
  TransDTI: Transformer-based language models for estimating DTIs and building a drug-recommendation workflow
  ☆11Updated 2 years ago
• jiangdada1221 / DrugOrchestra
  ☆11Updated last year
• BioColLab / PFresGO
  ☆21Updated last year
• bio-ontology-research-group / deepgozero
  DeepGO with Fuzzy DL
  ☆30Updated 2 years ago
• broadinstitute / EmmaEmb
  ☆12Updated 3 weeks ago
• brianhie / uncertainty
  Learning with uncertainty for biological discovery and design
  ☆34Updated 2 years ago
• MaayanLab / archs4py
  Python package to load and query ARCHS4 data
  ☆20Updated last month
• astrazeneca-cgr-publications / DrugnomeAI-release
  ☆17Updated 7 months ago
• bsml320 / VAEN
  A deep generative neural network based approach to impute drug response
  ☆20Updated 3 years ago
• baranwa2 / MetabolicPathwayPrediction
  ☆32Updated last year
• hosseinshn / MOLI
  MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction
  ☆54Updated 4 years ago
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆71Updated last year
• Novartis / ChemBioMultimodalAutoencoders
  a package for streamlined multidomain data integration and translation based on cross-modal autoencoders architectures
  ☆28Updated last year
• mikejhuang / PhageProtVec
  Amino Acid Embedding Representation as Machine Learning Features
  ☆20Updated 6 years ago