rpeckner-broad / Specter
Specter: linear deconvolution for targeted analysis of data-independent acquisition mass spectrometry proteomics
☆17Updated 6 years ago
Alternatives and similar repositories for Specter:
Users that are interested in Specter are comparing it to the libraries listed below
- An open-source Python package to unify raw MS data accession and storage.☆18Updated 4 months ago
- pyQms, generalized, fast and accurate mass spectrometry data quantification☆28Updated 6 months ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆40Updated this week
- MS/MS prediction for peptides☆22Updated 4 years ago
- ☆14Updated 2 years ago
- ☆8Updated 4 months ago
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆25Updated 2 months ago
- Some hopefully useful tools for mass spectrometry applied to proteomics☆52Updated 3 years ago
- Streamlining Mass Spectrometry Data Visualization with Pandas☆11Updated last week
- ☆13Updated 10 months ago
- EasyPQP: Simple library generation for OpenSWATH☆10Updated 3 months ago
- a deep learning-based retention time alignment tool for large cohort LC-MS data analysis☆11Updated last year
- A known-to-unknown metabolite identification workflow☆19Updated 4 years ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆58Updated last month
- IsoCor: Isotope Correction for mass spectrometry labeling experiments☆24Updated last year
- PyProphet: Semi-supervised learning and scoring of OpenSWATH results.☆29Updated last month
- Fast and flexible semi-supervised learning for peptide detection in Python☆43Updated last month
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Updated 2 years ago
- ☆34Updated this week
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Updated 3 years ago
- Workflow for LC-MS feature analysis and spatial mapping☆19Updated 6 years ago
- Matthew The's implementation of MaRaCluster☆11Updated 2 years ago
- This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network☆28Updated last year
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆30Updated 8 months ago
- Feature finding algorithm for detection of isotope patterns in HPLC mass spectrometry data.☆42Updated 2 years ago
- Group-DIA, a software for analyzing multiple DIA data files☆12Updated 8 years ago
- Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)☆23Updated last year
- Scoring functions to compare MS/MS spectra☆11Updated 7 years ago
- CANOPUS visualization for Jupyter notebook☆20Updated 2 years ago
- ☆15Updated 5 years ago