Alternatives and similar repositories for metagenomics-book

Users that are interested in metagenomics-book are comparing it to the libraries listed below

• cjfields / bioperl6
  reimplementation of BioPerl classes in Raku (e.g. the language formerly known as Perl6)
  ☆48Updated 6 years ago
• genoo / GenOO
  A Modern Perl Framework for High Throughput Sequencing analysis
  ☆17Updated 5 years ago
• indraniel / fqgrep
  An approximate sequence pattern matcher for FASTQ/FASTA files.
  ☆31Updated 9 years ago
• Nanguage / bioView
  Readability enhancement tool for bioinformatics data file format
  ☆30Updated 5 years ago
• galantelab / sandy
  A straightforward and complete next-generation sequencing read simulator
  ☆21Updated last year
• desmid / mview
  MView extracts and reformats the results of a sequence database search or multiple alignment.
  ☆32Updated last year
• bioperl / bioperl.github.io
  The BioPerl Web site: http://bioperl.org
  ☆14Updated 6 years ago
• Ensembl / Bio-DB-HTS
  Git repo for Bio::HTS module on CPAN, providing Perl links into HTSlib
  ☆25Updated 8 months ago
• dnbaker / bonsai
  Bonsai: Fast, flexible taxonomic analysis and classification
  ☆71Updated last year
• EntropyOrg / p5-Devel-IPerl
  Perl5 language kernel for Jupyter <http://jupyter.org/>
  ☆96Updated 2 years ago
• pierre-vigier / Perl6-Math-Matrix
  fully featured data type for matrix math
  ☆20Updated 5 years ago
• johanneskoester / alpaca
  ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…
  ☆23Updated 10 months ago
• wyim-pgl / DCBLAST
  Divide and Conquer BLAST: using grid engines to accelerate NCBI-BLAST+ and other sequence analysis tools
  ☆11Updated 5 years ago
• cbg-ethz / ConsensusFixer
  Computes a consensus sequence with wobbles, ambiguous bases, and in-frame insertions, from a NGS read alignment.
  ☆18Updated 7 years ago
• kloetzl / biozsh
  the z in bioinformatics
  ☆33Updated 2 years ago
• yhoogstrate / fastafs
  toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files
  ☆22Updated last year
• lstein / Perl-GD
  Perl GD module for bitmap graphics
  ☆33Updated last year
• hallamlab / mp_tutorial
  A repository of notes, code, slides, and resources for the MetaPathways tutorial being held February 2014 at UBC.
  ☆18Updated 10 years ago
• vsbuffalo / makefiles-in-bioinfo
  A talk on Makesfiles in bioinformatics
  ☆26Updated 12 years ago
• brentp / tiwih
  simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
  ☆44Updated 2 years ago
• luslab / luslab-nf-modules
  Luslab nextflow modules
  ☆14Updated 4 years ago
• lexnederbragt / INF-BIO9120_fall2013_de_novo_assembly
  Course material for the de novo assembly part of the INF-BIO9120 course at Univ. of Oslo Fall 2013
  ☆37Updated 11 years ago
• vsbuffalo / snakemake-tutorial
  Snakemake tutorial materials
  ☆19Updated 5 years ago
• waldronlab / HMP16SData
  16S rRNA Sequencing Data from the Human Microbiome Project
  ☆10Updated 4 months ago
• bschiffthaler / kogia
  Docker containers for bioinformatics with a small footprint
  ☆23Updated 2 years ago
• phiweger / darkq
  A message queue for genomic surveillance
  ☆19Updated 3 years ago
• NCBI-Hackathons / Virus_Detection_SRA
  ☆10Updated 7 years ago
• incertae-sedis / smof
  Explore and analyze biological sequence data
  ☆16Updated last year
• sanger-pathogens / companion
  This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion
  ☆21Updated 4 years ago
• mpinese / nimpress
  Polygenic score calculation from VCF in Nim.
  ☆15Updated 4 years ago