Alternatives and similar repositories for metagenomics-book

Users that are interested in metagenomics-book are comparing it to the libraries listed below

• cjfields / bioperl6
  reimplementation of BioPerl classes in Raku (e.g. the language formerly known as Perl6)
  ☆48Updated 6 years ago
• genoo / GenOO
  A Modern Perl Framework for High Throughput Sequencing analysis
  ☆17Updated 5 years ago
• indraniel / fqgrep
  An approximate sequence pattern matcher for FASTQ/FASTA files.
  ☆30Updated 9 years ago
• addgene / openbio
  A collection of open source bioinformatics tools developed and used by Addgene.
  ☆11Updated last month
• iqbal-lab / cortex
  reference free variant assembly
  ☆33Updated 2 years ago
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆32Updated 6 months ago
• qibebt-bioinfo / meta-storms
  Meta-Storms 2 is the standalone implementation of the Microbiome Search Engine (MSE; http://mse.ac.cn). This is the official software re…
  ☆10Updated 5 years ago
• medvir / VirMet
  Set of tools for viral metagenomics.
  ☆14Updated last week
• wyim-pgl / DCBLAST
  Divide and Conquer BLAST: using grid engines to accelerate NCBI-BLAST+ and other sequence analysis tools
  ☆12Updated 5 years ago
• neilfws / utils4bioinformatics
  Little code snippets that do (hopefully) useful things
  ☆23Updated last year
• Ensembl / Bio-DB-HTS
  Git repo for Bio::HTS module on CPAN, providing Perl links into HTSlib
  ☆24Updated 6 months ago
• smdabdoub / phylotoast
  Tools for phylogenetic data analysis including visualization and cluster-computing support.
  ☆14Updated 3 years ago
• dnbaker / bonsai
  Bonsai: Fast, flexible taxonomic analysis and classification
  ☆71Updated last year
• hallamlab / mp_tutorial
  A repository of notes, code, slides, and resources for the MetaPathways tutorial being held February 2014 at UBC.
  ☆19Updated 10 years ago
• tlawrence3 / FAST
  FAST: Fast Analysis of Sequences Toolbox
  ☆31Updated 5 years ago
• shenwei356 / strobemers
  A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)
  ☆15Updated 4 years ago
• danknights / mwas
  Perform microbiome-wide association studies with a variety of models
  ☆18Updated 8 years ago
• Geo-omics / scripts
  Metagenomic pipeline and other general scripts used in the lab.
  ☆35Updated 5 months ago
• Bioconductor / KEGGREST
  Client-side REST access to KEGG
  ☆12Updated last month
• Nanguage / bioView
  Readability enhancement tool for bioinformatics data file format
  ☆30Updated 5 years ago
• johanneskoester / alpaca
  ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…
  ☆23Updated 8 months ago
• edawson / mkmh
  Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.
  ☆24Updated 4 years ago
• arewebioyet / arewebioyet.github.io
  Rust in bioinformatics and computational biology
  ☆20Updated 2 years ago
• macmanes-lab / Gen711
  ☆12Updated 8 years ago
• lindenb / verticalize
  Simple tool to verticalize text delimited files.
  ☆37Updated last year
• arshajii / ema
  Fast & accurate alignment of barcoded short-reads
  ☆33Updated 2 years ago
• genenetwork / genenetwork2
  GeneNetwork (2nd generation)
  ☆35Updated last week
• NCBI-Codeathons / SWIGG
  A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers
  ☆22Updated 5 years ago
• 10XGenomics / orbit
  Rust wrapper for STAR aligner
  ☆17Updated this week
• snz20 / carnelian
  ☆11Updated 4 years ago