Alternatives and similar repositories for LOGO

Users that are interested in LOGO are comparing it to the libraries listed below

• lab-conrad / resVAE
  resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…
  ☆12Updated 2 years ago
• HarveyYan / RNATracker
  Prediction of mRNA subcellular localization using deep recurrent neural networks
  ☆15Updated 5 years ago
• wangshenguiuc / set2gaussian
  code repo for Set2Gaussian
  ☆15Updated 5 years ago
• xiaoyeye / CNNC
  covolutional neural network based coexpression analysis
  ☆78Updated 5 years ago
• castillohair / paper-5utr-design
  Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"
  ☆21Updated last year
• MedChaabane / DeepBind-with-PyTorch
  CNN architecture for predicting DNA binding sites for Transcription Factors
  ☆52Updated 6 years ago
• jingcheng-du / Gene2vec
  Gene2Vec: Distributed Representation of Genes Based on Co-Expression
  ☆120Updated 3 years ago
• ruiyi-zhang / scPretrain
  scPretrain: Multi-task self-supervised learning for cell type classification
  ☆23Updated 3 years ago
• arefeen / DeepPASTA
  ☆10Updated 5 years ago
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆82Updated 3 years ago
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆49Updated 5 months ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆50Updated 3 years ago
• mhorlacher / rbpnet
  ☆18Updated last year
• jdcla / DNA-transformer
  ☆34Updated 3 years ago
• Tsedao / MultiRM
  [Nat. Commun.] Code for paper 'Attention-based multi-label neural networks for integrated prediction and interpretation of twelve widely …
  ☆30Updated 3 years ago
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 3 years ago
• xiaoyeye / GCNG
  using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions
  ☆56Updated 4 years ago
• gdewael / cpg-transformer
  CpG Transformer for imputation of single-cell methylomes
  ☆38Updated last year
• ZJUFanLab / scDeepSort
  Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
  ☆103Updated 2 years ago
• melobio / Concerto-reproducibility
  ☆38Updated 2 years ago
• Tsinghua-gongjing / StructureImpute
  Deep learning based imputation of RNA secondary structure profile.
  ☆13Updated 3 years ago
• marakeby / pnet_prostate_paper
  P-NET, Biologically informed deep neural network for prostate cancer classification and discovery
  ☆156Updated 3 years ago
• hendrixlab / mRNN
  mRNN is an implementation of a Gated Recurrent Unit (GRU) network for classification of transcripts as either coding or noncoding.
  ☆21Updated 6 years ago
• ShenLab / gMVP
  ☆21Updated 2 years ago
• jianlin-cheng / DeepGRN
  Deep learning for modeling gene regulatory network
  ☆22Updated 3 years ago
• zj-zhang / AMBER
  Automated Modelling for Biological Evidence-based Research
  ☆45Updated last year
• johli / aparent
  APA Regression Net - Predict and Engineer Alternative Polyadenylation
  ☆39Updated 3 years ago
• KarchinLab / mhcnuggets
  MHC Class I and Class II neoantigen binding prediction
  ☆30Updated 2 years ago
• ShenLab-Genomics / SpliceTransformer
  SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence
  ☆27Updated 7 months ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago