lucasnell / jackalope
A swift, versatile phylogenomic and high-throughput sequencing simulator
☆8Updated last year
Alternatives and similar repositories for jackalope:
Users that are interested in jackalope are comparing it to the libraries listed below
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Updated 3 years ago
- CLI to automate Nextflow pipeline testing☆12Updated 2 months ago
- Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)☆14Updated last month
- Add functional variant annotation to MAF file☆11Updated 2 months ago
- SKATE R Utilities☆9Updated 7 months ago
- Color DNA/RNA bases in terminal output☆20Updated 7 years ago
- amplicon/smMIP mapping and analysis pipeline☆11Updated 2 years ago
- R package to quickly obtain count vectors from indexed bam files☆14Updated 3 years ago
- Kinship In Mixed Model Analysis of RNA-seq☆11Updated 8 months ago
- Machine learning use cases for teaching☆13Updated 7 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Updated 3 years ago
- integrative pathway analysis with modern PCA methodology and gene selection☆11Updated last year
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆10Updated 3 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- ☆22Updated last month
- k-mer similarity analysis pipeline☆20Updated this week
- ☆9Updated 2 years ago
- Simplifies parallel processing of DNA sequencing reads☆9Updated 3 months ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 5 years ago
- HGNC Comparison of Orthology Predictions (HCOP)☆14Updated 6 years ago
- stageR package☆11Updated last year
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆11Updated 2 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 5 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆17Updated 9 months ago
- A utility for splitting mixed origin NGS reads☆10Updated 3 years ago
- R interface to megadepth: BigWig and BAM related utilities☆12Updated last month
- Sample an approximate number of reads from a fastq file without reading the entire file☆11Updated 7 years ago