ITEP - Integrated Toolkit for Exploration of microbial Pan-genomes
☆28Feb 15, 2019Updated 7 years ago
Alternatives and similar repositories for clusterDbAnalysis
Users that are interested in clusterDbAnalysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A list of weak Bacterial assemblies in GenBank☆18Aug 3, 2017Updated 8 years ago
- Web content for Meren Lab☆11Apr 28, 2026Updated last week
- k-means + a linear model = good results☆55Aug 2, 2014Updated 11 years ago
- Portable database of microhaplotype marker and allele frequency data☆11Oct 2, 2025Updated 7 months ago
- Tools for analyzing trees☆13Apr 16, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 9 years ago
- long-read depth breaking☆11Apr 19, 2018Updated 8 years ago
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Jan 30, 2016Updated 10 years ago
- Pan-genomic sequence analysis☆46Jul 11, 2022Updated 3 years ago
- Scripts☆10Jun 29, 2016Updated 9 years ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆23Nov 21, 2023Updated 2 years ago
- STAMPS 2018 course☆14Aug 8, 2018Updated 7 years ago
- t-distributed stochastic neighbor embedding for microbiota data☆12May 12, 2019Updated 6 years ago
- SPecies level IdentificatioN of metaGenOmic amplicons☆11Apr 11, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Mar 17, 2016Updated 10 years ago
- An application to remove PCR duplicates from high throughput sequencing runs.☆11Apr 22, 2018Updated 8 years ago
- Visualization and management of denovo transcriptomes☆10Feb 26, 2021Updated 5 years ago
- A toolbox for comparative genomics.☆109May 26, 2021Updated 4 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 5 months ago
- Rapid large-scale prokaryote pan genome analysis☆378Nov 3, 2025Updated 6 months ago
- ☆12Oct 3, 2023Updated 2 years ago
- gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid, taxid2taxon, name2taxid, LCA) tool, with cmd client and REST API se…☆14Jul 24, 2016Updated 9 years ago
- Analyzer of Gene and Species Trees☆11Aug 8, 2016Updated 9 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Genome Scripts used in fungal comparative genomics☆65Sep 25, 2020Updated 5 years ago
- Programs and documentation for the SAMSA pipeline, version 1.0☆16Dec 16, 2019Updated 6 years ago
- ☆16Feb 5, 2025Updated last year
- Comparing and combining multiple metagenomic datasets☆16Oct 12, 2022Updated 3 years ago
- 整合型的对于生物学注释的信息/GO和KEGG全谱注释和富集☆14Nov 8, 2017Updated 8 years ago
- METAREP: JCVI Metagenomics Reports - an open source tool for high-performance comparative metagenomics☆26Mar 21, 2013Updated 13 years ago
- A toolkit for prokaryotic comparative genomics☆51Feb 23, 2026Updated 2 months ago
- This R package is used to calculate CO2 and CH4 gas fluxes measured with static chamber method. It provide a easy way to calculate multip…☆11May 20, 2021Updated 4 years ago
- Tool for visualising assemblies.☆17Sep 15, 2015Updated 10 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆12Oct 17, 2017Updated 8 years ago
- MONSDA, Modular Organizer of Nextflow and Snakemake driven hts Data Analysis☆12Updated this week
- de novo virus assembler of Illumina paired reads☆58May 17, 2021Updated 4 years ago
- ☆12May 11, 2016Updated 9 years ago
- This repo is archived, the these workflows are still available in the GATK repository under the scripts directory. The workflows are also…☆11Mar 9, 2020Updated 6 years ago
- This is a simple introductory tutorial to help you get started with using BEAST2 and its accomplices.☆11Jul 8, 2025Updated 10 months ago
- A Pedantic FASTA Parser and Tool Set☆14Apr 22, 2020Updated 6 years ago