ITEP - Integrated Toolkit for Exploration of microbial Pan-genomes
☆28Feb 15, 2019Updated 7 years ago
Alternatives and similar repositories for clusterDbAnalysis
Users that are interested in clusterDbAnalysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A list of weak Bacterial assemblies in GenBank☆18Aug 3, 2017Updated 8 years ago
- Tools for analyzing trees☆13Apr 16, 2025Updated last year
- long-read depth breaking☆12Apr 19, 2018Updated 8 years ago
- STAMPS 2018 course☆14Aug 8, 2018Updated 7 years ago
- Comparing and combining multiple metagenomic datasets☆16Oct 12, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆12Oct 3, 2023Updated 2 years ago
- Bioinformatics Training Platform (BTP) Workshop: Introduction to NGS☆10Oct 31, 2018Updated 7 years ago
- ☆53May 11, 2021Updated 5 years ago
- Tool for visualising assemblies.☆17Sep 15, 2015Updated 10 years ago
- Improving genome bins through the combination of different binning programs☆31Jan 30, 2023Updated 3 years ago
- Report salient qPCR primer/probe or immune epitope mismatches info against a set of pathogen isolate genomes☆16Mar 11, 2025Updated last year
- KBase distribution module for RASTtk.☆13Sep 14, 2020Updated 5 years ago
- Web content for Meren Lab☆11Updated this week
- All The Bacteria CLI — query 3.2M bacterial genomes (AMR, MLST, assemblies, metadata) from the terminal☆33Jul 10, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Portable database of microhaplotype marker and allele frequency data☆11Oct 2, 2025Updated 9 months ago
- A simple script to display stuff on a world map with R and ggplot☆18Feb 17, 2026Updated 5 months ago
- Raspir, the rare species identifier☆11Oct 19, 2023Updated 2 years ago
- ☆16Jan 10, 2023Updated 3 years ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Mar 18, 2022Updated 4 years ago
- useful command-line tools written to showcase hts-nim☆50Nov 10, 2020Updated 5 years ago
- Rapid large-scale prokaryote pan genome analysis☆378Nov 3, 2025Updated 8 months ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆28Apr 11, 2018Updated 8 years ago
- ☆84Sep 13, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A toolbox for comparative genomics.☆110May 26, 2021Updated 5 years ago
- Pan-genomic sequence analysis☆46Jul 11, 2022Updated 4 years ago
- An automated assembly pipeline for microbial genomes☆19Jun 9, 2026Updated last month
- ViraPipe is distributed Apache Spark based metagenome analytics pipeline for scalable detection of pathogens from NGS data☆16Jul 3, 2018Updated 8 years ago
- High throughput sequencing analysis tools☆30Apr 21, 2025Updated last year
- A tool for removing redundant genomes from a set of assemblies☆84May 6, 2026Updated 2 months ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 9 years ago
- A Swiss army knife for genome projects☆15Aug 13, 2013Updated 12 years ago
- Gene Absence Presence Identification tool.☆27Mar 28, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A tool to measure bacteriophages plaque sizes☆17May 12, 2023Updated 3 years ago
- A small library for ranges/intervals, for use with genomic data.☆17Nov 27, 2012Updated 13 years ago
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Jan 30, 2016Updated 10 years ago
- MIRA: Portable, Interactive Application for High-Quality Influenza, SARS-CoV-2 and RSV Genome Assembly, Annotation, and Curation☆25Jul 14, 2026Updated last week
- An algorithm for recovering haplotypes from metagenomes☆30Jun 29, 2021Updated 5 years ago
- A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concat…☆60May 7, 2026Updated 2 months ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated last year