marco-oliva / pfpLinks
Prefix Free Parsing
☆8Updated last year
Alternatives and similar repositories for pfp
Users that are interested in pfp are comparing it to the libraries listed below
Sorting:
- Fast and cache-efficient full-text pangenome index☆29Updated this week
- ☆25Updated 4 years ago
- Efficient construction of the BWT using string compression☆18Updated 2 months ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆25Updated last year
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- A hash map using the BooPHF perfect hash function☆13Updated 8 years ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆43Updated last year
- Header-only, gzread-like reader for gzip, bz2, and xz.☆12Updated 6 years ago
- Practical Dynamic de Bruijn Graphs☆18Updated 4 years ago
- De Bruijn graph representation in low memory☆36Updated last year
- A tool for merging large BWTs☆26Updated 4 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆53Updated 4 months ago
- Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays☆13Updated last month
- A fast constructor of the compressed de Bruijn graph from many genomes☆41Updated 6 months ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆25Updated 3 months ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 4 years ago
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆24Updated 4 months ago
- Optimal distance lower bound k-mer sampling.☆12Updated last year
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- Implicit Interval Tree with Interpolation Index☆41Updated 3 years ago
- Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index☆81Updated last year
- ☆8Updated 3 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Updated 2 years ago
- Efficient, parallel compression for terabyte-scale data☆48Updated 2 months ago
- collection of data structures and algorithms☆19Updated 6 years ago
- ☆25Updated 4 years ago
- Pan-genome Seed Index☆20Updated 4 months ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- Library for the Handle Graph abstraction☆23Updated last month