AdalbertoCq / Histomorphological-Phenotype-Learning
Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Quesne J.*, Tsirigos A.*, and Yuan K.* Mapping the landscape of histomorphological cancer phenotypes using self-supervised learning on unlabeled, unannotated pathology slides. 2024'
☆47Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for Histomorphological-Phenotype-Learning
- Histopathology Image Analysis☆90Updated last year
- ☆43Updated last year
- Solid Tumor Associative Modeling in Pathology☆46Updated last month
- Data and code to accompany our Nature publication☆43Updated 2 years ago
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆64Updated 9 months ago
- First commit☆58Updated 2 years ago
- Tools to build deep learning pipelines.☆84Updated last month
- Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis☆18Updated 7 months ago
- Code from Foersch et al. (Under Construction / Development)☆35Updated last year
- Multimodal prototyping for cancer survival prediction - ICML 2024☆55Updated last month
- Pipeline for computational pathology☆33Updated 10 months ago
- [The Lancet Digital Health, MICCAI2020 Oral] The official code of "Spatially-aware Graph Neural Networks and Cross-level Molecular Profil…☆25Updated last year
- Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine☆28Updated 2 years ago
- A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.☆27Updated 5 months ago
- Multimodal deep learning to predict distant recurrence-free probability from digitized H&E tumour slide and tumour stage.☆30Updated 4 months ago
- Artificial Intelligence predicts immune and inflammatory gene signatures directly from hepatocellular carcinoma histology images☆19Updated 4 months ago
- Blazing fast nuclei segmentation for brightfield Whole Slide Images☆30Updated last month
- Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.☆24Updated 4 years ago
- ☆49Updated 2 years ago
- A pan-cancer platform for mutation prediction from routine histology☆67Updated 3 years ago
- Python 3 library for the augmentation & normalization of H&E images☆51Updated 2 years ago
- Re-stained whole slide image alignment☆31Updated last year
- A Python library for deep learning on whole-slide images☆50Updated 3 years ago
- ☆36Updated last year
- Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024☆92Updated last month
- ☆45Updated last year
- ☆45Updated 2 years ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆67Updated last year
- This package provides tools for training supervised machine learning models for computational pathology tasks using tile-level embeddings…☆27Updated 2 months ago
- A pipeline to segment tissue from the background in histological images☆65Updated last year