ozanciga / self-supervised-histopathologyLinks
Pretrained model for self supervised histopathology
☆120Updated 3 years ago
Alternatives and similar repositories for self-supervised-histopathology
Users that are interested in self-supervised-histopathology are comparing it to the libraries listed below
Sorting:
- Self-Supervised Vision Transformers Learn Visual Concepts in Histopathology (LMRL Workshop, NeurIPS 2021)☆140Updated 3 years ago
- Stain normalization tools for histological analysis and computational pathology☆153Updated 8 months ago
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆261Updated last year
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆106Updated 10 months ago
- Histopathology Image Analysis☆92Updated 2 years ago
- Some stain normalization code☆90Updated 3 years ago
- A pipeline to segment tissue from the background in histological images☆69Updated 2 years ago
- Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024☆140Updated 4 years ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆69Updated 2 years ago
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆57Updated 2 years ago
- ZoomMIL is a multiple instance learning (MIL) method that learns to perform multi-level zooming for efficient Whole-Slide Image (WSI) cla…☆66Updated 2 years ago
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆36Updated last year
- ☆56Updated 3 years ago
- Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021☆155Updated last year
- Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, …☆213Updated last month
- AI-based pathology predicts origins for cancers of unknown primary - Nature☆175Updated 3 years ago
- Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering☆108Updated 2 years ago
- Official repository of Benchmarking Self-Supervised Learning on Diverse Pathology Datasets☆90Updated 2 years ago
- List of pathology feature extractors and foundation models☆153Updated 4 months ago
- Encoder-Decoder Cell and Nuclei segmentation models☆95Updated last month
- Deep Learning-based Frozen Section to FFPE Translation☆64Updated last year
- H&E histopathological staining normalization☆109Updated 5 years ago
- Fusing Histology and Genomics via Deep Learning - IEEE TMI☆321Updated 3 years ago
- ☆64Updated last year
- StainNet: a fast and robust stain normalization network☆51Updated 3 years ago
- Python Whole Slide Image Preprocessing☆293Updated 2 years ago
- Interpretable Gland-Graph Networks☆22Updated last year
- Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning☆55Updated 2 years ago
- Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., Med…☆158Updated last year
- One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification☆93Updated 10 months ago