Alternatives and similar repositories for lookseq

Users that are interested in lookseq are comparing it to the libraries listed below

• Guannan-Wang / GOMCL
  GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions
  ☆21Updated last year
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆32Updated 11 months ago
• cmdcolin / mafviewer
  A JBrowse plugin to view multiple alignment format (MAF) files
  ☆26Updated last year
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆31Updated 3 years ago
• linsalrob / genbank_to
  Convert genbank files to a swath of other formats
  ☆18Updated last year
• jorgenunezsiri / accusyn
  AccuSyn: An Accurate Web-based Genome Synteny Browser
  ☆16Updated 8 months ago
• ihh / abrowse
  Multiple sequence alignment browser
  ☆11Updated 2 years ago
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆25Updated last year
• bcgsc / SSAKE
  🍶 Genome assembly with short sequence reads
  ☆25Updated last year
• Benson-Genomics-Lab / IRF
  Inverted Repeats Finder: a program to analyze DNA and RNA sequences
  ☆17Updated 2 months ago
• KevinKuchinski / ProbeTools
  Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa
  ☆24Updated last year
• kensung-lab / INSurVeyor
  An insertion caller for Illumina paired-end WGS data.
  ☆23Updated 9 months ago
• AGIScuipeng / PMPrimer
  Automatically design multiplex PCR primer pairs for diverse templates
  ☆26Updated 11 months ago
• PacificBiosciences / pbmarkdup
  Mark duplicate reads from PacBio sequencing of an amplified library
  ☆11Updated 2 months ago
• mpdunne / orthofiller
  OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.
  ☆22Updated 2 years ago
• AstraZeneca-NGS / simple_sv_annotation
  Simplify snpEff annotations for interesting cases
  ☆22Updated 6 years ago
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆39Updated this week
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆34Updated 2 months ago
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆31Updated 2 weeks ago
• matsengrp / phip-flow
  A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets
  ☆12Updated 3 months ago
• pantherdb / TreeGrafter
  TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.
  ☆11Updated 4 years ago
• vibansal / hapcut
  program for haplotype phasing from sequence reads and related tools
  ☆25Updated 6 years ago
• ProwlerForNanopore / ProwlerTrimmer
  Trimming tool for Oxford Nanopore sequence data
  ☆21Updated 3 years ago
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆26Updated 2 years ago
• nch-igm / snvstory
  Rapid and accurate ancestry inference using SNVs.
  ☆19Updated this week
• Gaius-Augustus / GUSHR
  Generating UTRs from SHort Reads
  ☆12Updated 4 years ago
• kalininalab / metaprofi
  MetaProFi is a bloom filter based tool for storing and querying sequence data for accurate identification of functionally relevant geneti…
  ☆12Updated 3 years ago
• ExpressionAnalysis / CNV_Radar
  CNV Rapid Aberration Detection And Reporting
  ☆12Updated 4 years ago
• huangnengCSU / NanoSNP
  A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.
  ☆21Updated 2 years ago
• cliu32 / Athlon
  Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing
  ☆15Updated 7 years ago