Alternatives and similar repositories for controlled-peptide-generation

Users that are interested in controlled-peptide-generation are comparing it to the libraries listed below

• drorlab / DIPS
  Database of Interacting Protein Structures (DIPS)
  ☆102Updated last year
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆101Updated 9 months ago
• luoyunan / ECNet
  An evolutionary context-integrated deep learning framework for protein engineering
  ☆63Updated 3 years ago
• IBM / fold2seq
  Code for Fold2Seq paper from ICML 2021
  ☆50Updated 3 years ago
• piercelab / antibody_benchmark
  Antibody-Antigen Docking and Affinity Benchmark
  ☆72Updated 4 years ago
• HeliXonProtein / binding-ddg-predictor
  open source repository
  ☆138Updated last year
• Shen-Lab / DeepAffinity
  Protein-compound affinity prediction through unified RNN-CNN
  ☆146Updated 11 months ago
• rxn4chemistry / biocatalysis-model
  RXN for biochemical reactions
  ☆69Updated 2 years ago
• psipred / protein-vae
  Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies
  ☆87Updated 2 years ago
• wengong-jin / RefineGNN
  ☆129Updated 2 years ago
• wengong-jin / abdockgen
  ☆106Updated 2 years ago
• drorlab / gvp
  Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure
  ☆147Updated 4 years ago
• BioinfoMachineLearning / DIPS-Plus
  The Enhanced Database of Interacting Protein Structures for Interface Prediction
  ☆49Updated last year
• hiranumn / DeepAccNet
  Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.
  ☆88Updated 4 years ago
• kiharalab / GNN_DOVE
  Code for "Protein Docking Model Evaluation by Graph Neural Networks"
  ☆59Updated 2 years ago
• zhenglz / onionnet
  A multiple-layer inter-molecular contact features based deep neural network for protein-ligand binding affinity prediction
  ☆80Updated 4 years ago
• FreyrS / dMaSIF
  ☆214Updated 2 years ago
• RosettaCommons / trRosetta2
  Repository for publicly available deep learning models developed in Rosetta community
  ☆117Updated 3 years ago
• ProteinDesignLab / protein_seq_des
  Code for our paper "Protein sequence design with a learned potential"
  ☆79Updated last year
• gersteinlab / ThermoNet
  ThermoNet is a computational method for quantitative prediction of the impact of single-point mutations on protein thermodynamic stabilit…
  ☆117Updated last year
• ostrokach / proteinsolver
  Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.
  ☆60Updated 4 years ago
• LLNL / FAST
  Fusion models for Atomic and molecular STructures (FAST)
  ☆91Updated 2 years ago
• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆157Updated 9 months ago
• jproney / AF2Rank
  ☆109Updated 2 years ago
• gjoni / trDesign
  trRosetta for protein design
  ☆182Updated 4 years ago
• anton-bushuiev / PPIRef
  Dataset and package for working with protein-protein interactions in 3D
  ☆94Updated 2 months ago
• jertubiana / ScanNet
  ☆128Updated 3 weeks ago
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆126Updated 3 years ago
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆154Updated 2 years ago
• ketatam / DiffDock-PP
  Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)
  ☆210Updated last year