fusong-ju / ProFOLD
A protein 3D structure prediction application
☆65Updated 3 years ago
Related projects: ⓘ
- A geometric deep learning pipeline for predicting protein interface contacts. (ICLR 2022)☆63Updated 2 years ago
- Code for Fold2Seq paper from ICML 2021☆49Updated 2 years ago
- Code for our paper "Protein sequence design with a learned potential"☆76Updated last year
- open source repository☆123Updated 9 months ago
- Database of Interacting Protein Structures (DIPS)☆91Updated 7 months ago
- source code for https://arxiv.org/abs/2005.11248 "Accelerating Antimicrobial Discovery with Controllable Deep Generative Models and Molec…☆98Updated last year
- ResPRE is an algorithm for protein residue-residue contact-map prediction☆20Updated 5 years ago
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆44Updated last year
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆100Updated 2 years ago
- Deep residual neural network for protein contact/distance prediction developed by Xu group☆77Updated 4 years ago
- ☆127Updated 2 years ago
- Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.☆77Updated 3 years ago
- Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design☆79Updated 3 years ago
- An evolutionary context-integrated deep learning framework for protein engineering☆61Updated 2 years ago
- ☆55Updated this week
- ☆75Updated 2 years ago
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆53Updated last year
- Code for "Protein Docking Model Evaluation by Graph Neural Networks"☆56Updated last year
- ☆92Updated last year
- Repository for publicly available deep learning models developed in Rosetta community☆106Updated 3 years ago
- MSA Transformer reproduction code☆63Updated 2 years ago
- ☆25Updated last year
- Protein generative model conditioned on Gene Ontology terms☆34Updated 2 years ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆91Updated last year
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆80Updated last year
- PointSite: a point cloud segmentation tool for identification of protein ligand binding atoms☆51Updated last year
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆72Updated 9 months ago
- A fork for the old hhsuite-2.0.16☆10Updated 3 years ago
- A multiple-layer inter-molecular contact features based deep neural network for protein-ligand binding affinity prediction☆76Updated 3 years ago
- ☆33Updated last year