fusong-ju / ProFOLDLinks
A protein 3D structure prediction application
☆67Updated 4 years ago
Alternatives and similar repositories for ProFOLD
Users that are interested in ProFOLD are comparing it to the libraries listed below
Sorting:
- Code for Fold2Seq paper from ICML 2021☆50Updated 3 years ago
- A geometric deep learning framework (Geometric Transformers) for predicting protein interface contacts. (ICLR 2022)☆64Updated 3 years ago
- Code for "Protein Docking Model Evaluation by Graph Neural Networks"☆59Updated 2 years ago
- Repository for publicly available deep learning models developed in Rosetta community☆119Updated 4 years ago
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆98Updated 3 years ago
- Database of Interacting Protein Structures (DIPS)☆102Updated last year
- Code for our paper "Protein sequence design with a learned potential"☆80Updated 2 years ago
- An evolutionary context-integrated deep learning framework for protein engineering☆65Updated 3 years ago
- Deep residual neural network for protein contact/distance prediction developed by Xu group☆79Updated 5 years ago
- open source repository☆143Updated last year
- source code for https://arxiv.org/abs/2005.11248 "Accelerating Antimicrobial Discovery with Controllable Deep Generative Models and Molec…☆106Updated last month
- Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design☆83Updated 4 years ago
- Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures☆48Updated 3 years ago
- ResPRE is an algorithm for protein residue-residue contact-map prediction☆21Updated 6 years ago
- A C, C++, Python project focusing on Docking analysis, Source code, Blogs, Data availability, References.☆26Updated 2 years ago
- ☆35Updated 3 years ago
- Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.☆59Updated 4 years ago
- ☆77Updated 2 years ago
- MSA Transformer reproduction code☆86Updated 4 years ago
- Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.☆90Updated 4 years ago
- A multiple-layer inter-molecular contact features based deep neural network for protein-ligand binding affinity prediction☆81Updated 4 years ago
- Protein-protein interaction sites prediction through combining local and global features with deep neural networks☆54Updated 6 years ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆90Updated 2 years ago
- ☆113Updated 2 years ago
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆50Updated 2 months ago
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆57Updated 3 years ago
- PaccMann models for protein language modeling☆43Updated 3 years ago
- Attempt at reproduction of AlphaFold2☆98Updated last year
- Protein quality assessment using Graph Convolutional Networks☆29Updated 3 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆60Updated 3 years ago