louisabraham / pydivsufsortLinks
Python package for string algorithms ➰
☆51Updated last month
Alternatives and similar repositories for pydivsufsort
Users that are interested in pydivsufsort are comparing it to the libraries listed below
Sorting:
- fast, pure-python interval overlap testing☆52Updated 5 years ago
- Open compressed files in Python☆81Updated 3 months ago
- NCLS. Basically a static interval-tree that is silly fast for both construction and lookups. Deprecated but maintained.☆224Updated 6 months ago
- LogLog space version of MinHash by combining ideas from HyperLogLog and b-bit MinHash☆57Updated 5 years ago
- A python library for efficient KNN search within metric spaces using multiple distance functions.☆14Updated last year
- Code accompanying the publication for compressed graph annotation☆13Updated 6 years ago
- Fishers Exact Test for Python (Cython)☆67Updated 10 months ago
- Easily map Python functions onto a cluster using a DRMAA-compatible grid engine like Sun Grid Engine (SGE).☆84Updated 2 years ago
- Fast hierarchical clustering routines for R and Python.☆156Updated last week
- Educational implementation of BWT and FM-index☆57Updated 7 years ago
- A minimal Python re-implementation of the A* with seed heuristic for exact global alignment (edit distance) in near-linear time☆22Updated last year
- Performs memory-efficient reservoir sampling on very large input files delimited by newlines☆69Updated 5 years ago
- Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.☆62Updated 5 months ago
- A minimalist tree plotting library using toyplot graphs☆187Updated last month
- GPU-Parallelized UMAP☆52Updated 6 years ago
- ☆23Updated 2 years ago
- a cythonized, extended version of the interval search tree in bx☆30Updated 6 years ago
- python package to read and write the Newick format☆48Updated 10 months ago
- A Snakemake executor plugin for submitting jobs to a SLURM cluster☆46Updated last week
- Jupyter Notebooks and other code for Altair-based Interactive UpSet Plots☆31Updated 4 years ago
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆49Updated last week
- fast, memory-efficient, pythonic (and command-line) access to fasta sequence files☆86Updated 8 years ago
- A simple Partial Order Aligner based on Lee, Grasso and Sharlow (2002), for education/demonstration purposes☆75Updated last year
- Python wrapper around the C DRMAA library.☆108Updated 6 years ago
- TreeSwift: Fast tree module for Python 3☆84Updated last year
- A repository for the GenGraph toolkit for the creation and manipulation of graph genomes☆51Updated 4 years ago
- Python library that facilitates opening, reading, and writing files (and file-like entities like URLs and streams) agnostic of compressio…☆24Updated 8 months ago
- sequence alignment. global, local, glocal.☆42Updated 9 years ago
- AStarix: Fast and Optimal Sequence-to-Graph Aligner☆74Updated 4 years ago
- Efficient handling of FASTQ files from Python☆51Updated last month