louisabraham / pydivsufsortLinks
Python package for string algorithms ➰
☆50Updated 11 months ago
Alternatives and similar repositories for pydivsufsort
Users that are interested in pydivsufsort are comparing it to the libraries listed below
Sorting:
- Open compressed files in Python☆80Updated last month
- fast, pure-python interval overlap testing☆52Updated 5 years ago
- NCLS. Basically a static interval-tree that is silly fast for both construction and lookups. Deprecated but maintained.☆224Updated 5 months ago
- A python library for efficient KNN search within metric spaces using multiple distance functions.☆14Updated last year
- LogLog space version of MinHash by combining ideas from HyperLogLog and b-bit MinHash☆57Updated 5 years ago
- Educational implementation of BWT and FM-index☆57Updated 7 years ago
- Easily map Python functions onto a cluster using a DRMAA-compatible grid engine like Sun Grid Engine (SGE).☆84Updated 2 years ago
- Code accompanying the publication for compressed graph annotation☆13Updated 6 years ago
- Performs memory-efficient reservoir sampling on very large input files delimited by newlines☆69Updated 5 years ago
- A minimalist tree plotting library using toyplot graphs☆184Updated last week
- Fishers Exact Test for Python (Cython)☆66Updated 8 months ago
- Native Python library for generic sequence alignment☆55Updated 5 years ago
- Faster zlib and gzip compatible compression and decompression by providing python bindings for the isa-l library.☆53Updated 2 months ago
- a cythonized, extended version of the interval search tree in bx☆30Updated 6 years ago
- GPU-Parallelized UMAP☆52Updated 6 years ago
- Fast hierarchical clustering routines for R and Python.☆154Updated last week
- A repository for the GenGraph toolkit for the creation and manipulation of graph genomes☆51Updated 4 years ago
- Jupyter Notebooks and other code for Altair-based Interactive UpSet Plots☆32Updated 4 years ago
- Python library that facilitates opening, reading, and writing files (and file-like entities like URLs and streams) agnostic of compressio…☆23Updated 7 months ago
- FM-index representation of a de Bruijn graph☆27Updated 8 years ago
- Fast pairwise sequence alignment using SeqAn, in Python.☆13Updated 6 years ago
- Augmented Interval Tree implemented in Cython/C☆20Updated 10 months ago
- python package to read and write the Newick format☆48Updated 8 months ago
- Efficient handling of FASTQ files from Python☆51Updated last week
- A minimal Python re-implementation of the A* with seed heuristic for exact global alignment (edit distance) in near-linear time☆22Updated last year
- A simple Partial Order Aligner based on Lee, Grasso and Sharlow (2002), for education/demonstration purposes☆74Updated last year
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆41Updated 3 months ago
- Python package to query and analyse UniProt☆25Updated 5 years ago
- ☆23Updated 2 years ago
- Pandas DataFrames for phylogenetics☆74Updated 4 years ago