Alternatives and similar repositories for pydivsufsort:

Users that are interested in pydivsufsort are comparing it to the libraries listed below

• brentp / interlap
  fast, pure-python interval overlap testing
  ☆52Updated 4 years ago
• pycompression / xopen
  Open compressed files in Python
  ☆73Updated 2 weeks ago
• brentp / quicksect
  a cythonized, extended version of the interval search tree in bx
  ☆30Updated 5 years ago
• brentp / fishers_exact_test
  Fishers Exact Test for Python (Cython)
  ☆65Updated 3 weeks ago
• ratschlab / graph_annotation
  Code accompanying the publication for compressed graph annotation
  ☆13Updated 6 years ago
• ljdursi / poapy
  A simple Partial Order Aligner based on Lee, Grasso and Sharlow (2002), for education/demonstration purposes
  ☆73Updated 9 months ago
• dkoslicki / CMash
  Fast and accurate set similarity estimation via containment min hash
  ☆42Updated 8 months ago
• Kingsford-Group / omhismb2019
  ☆23Updated last year
• hms-dbmi / upset-altair-notebook
  Jupyter Notebooks and other code for Altair-based Interactive UpSet Plots
  ☆31Updated 3 years ago
• abdenlab / oxbow
  Read specialized NGS formats as data frames in R, Python, and more.
  ☆70Updated this week
• TravisWheelerLab / AvxWindowFmIndex
  A fast, AVX2 and ARM Neon accelerated FM index library
  ☆32Updated 4 months ago
• jbloomlab / alignparse
  Align sequences and then parse features.
  ☆18Updated last week
• aziele / alfpy
  http://www.combio.pl/alfree
  ☆23Updated 2 years ago
• pyranges / ncls
  The Nested Containment List for Python. Basically a static interval-tree that is silly fast for both construction and lookups.
  ☆220Updated 7 months ago
• lgautier / mashing-pumpkins
  Minhash and maxhash library in Python, combining flexibility, expressivity, and performance.
  ☆21Updated 4 months ago
• mdshw5 / simplesam
  Simple pure Python SAM parser and objects for working with SAM records
  ☆64Updated 2 years ago
• jambler24 / GenGraph
  A repository for the GenGraph toolkit for the creation and manipulation of graph genomes
  ☆51Updated 3 years ago
• althonos / pytrimal
  Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
  ☆23Updated last month
• Edinburgh-Genome-Foundry / genome_collector
  Easily download genomes and build BLAST/Bowtie indexes in Python
  ☆21Updated 2 years ago
• JetBrains-Research / snakecharm
  Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.
  ☆62Updated 5 months ago
• mbreese / swalign
  Smith-Waterman local aligner
  ☆70Updated 2 years ago
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆72Updated 10 months ago
• brentp / align
  sequence alignment. global, local, glocal.
  ☆41Updated 8 years ago
• QData / GaKCo-SVM
  ECML16: GaKCo: a Fast Gapped k-mer string Kernel using Counting
  ☆14Updated 5 years ago
• ekg / drawbwt
  vector illustrations of BWT based searching on small strings
  ☆16Updated 5 years ago
• kylessmith / ailist
  Augmented Interval Tree implemented in Cython/C
  ☆20Updated 3 months ago
• dbikard / genomenotebook
  A genome browser in your Jupyter notebook
  ☆31Updated 3 months ago
• dlce-eva / python-newick
  python package to read and write the Newick format
  ☆48Updated last month
• Zsailer / phylopandas
  Pandas DataFrames for phylogenetics
  ☆73Updated 3 years ago
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆50Updated 3 months ago