Educational implementation of BWT and FM-index
☆57Sep 28, 2018Updated 7 years ago
Alternatives and similar repositories for fm-index
Users that are interested in fm-index are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- FM-Index full-text index implementation using RRR Wavelet trees (libcds) and fast suffix sorting (libdivsufsort) including experimental r…☆113Jan 22, 2015Updated 11 years ago
- C++ implementation of FM Index data structure wrapped in Python☆15Mar 13, 2023Updated 3 years ago
- String search using the Burrows-Wheeler transform☆19Dec 15, 2019Updated 6 years ago
- Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).☆13Apr 20, 2021Updated 5 years ago
- An approximate sequence pattern matcher for FASTQ/FASTA files.☆32Jan 22, 2016Updated 10 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Web based viewer for small to medium GFA format files, similar to Bandage☆13Jun 19, 2026Updated 3 months ago
- ☆12Sep 6, 2017Updated 9 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- Localization of transcribed enhancers and quntification of their usage from the initiation sites of bidirectionally transcribed loci