Faster zlib and gzip compatible compression and decompression by providing python bindings for the isa-l library.
☆55Sep 10, 2025Updated 6 months ago
Alternatives and similar repositories for python-isal
Users that are interested in python-isal are comparing it to the libraries listed below
Sorting:
- Open compressed files in Python☆81Oct 12, 2025Updated 5 months ago
- Python extension wrapper for libdeflate.☆31Oct 31, 2025Updated 4 months ago
- Portable Crystal binary distributions for Linux on x86_64☆15Mar 22, 2021Updated 4 years ago
- A multi-threading implement of Python gzip module☆61Mar 2, 2026Updated 2 weeks ago
- ☆32Dec 16, 2022Updated 3 years ago
- A multi-threading implement of Python gzip module☆58Feb 28, 2026Updated 3 weeks ago
- ☆16Oct 29, 2025Updated 4 months ago
- ☆18Feb 22, 2023Updated 3 years ago
- A simple BLOSUM module for python3☆18Nov 21, 2025Updated 4 months ago
- (Deprecated) Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproje…☆11Nov 9, 2024Updated last year
- Code and performance tests to demonstrate the COUNTLESS algorithm. https://medium.com/@willsilversmith/countless-high-performance-2x-down…☆10Oct 23, 2019Updated 6 years ago
- ☆33Aug 2, 2022Updated 3 years ago
- Plot allele frequencies in VCF files☆11Jun 4, 2019Updated 6 years ago
- MGI sequence platform data multiplexing tool☆12Sep 11, 2019Updated 6 years ago
- Efficiently read and write sequencing data from Python☆69Oct 12, 2025Updated 5 months ago
- A project to launch the galaxy docker image easily using ansible☆11Jan 22, 2020Updated 6 years ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆158Aug 8, 2025Updated 7 months ago
- Serialize dict of integers to bytes and read with near zero parsing. Specialization for int to int.☆10Mar 6, 2026Updated 2 weeks ago
- Compresso: Efficient Compression of Segmentation Data For Connectomics☆12Sep 7, 2021Updated 4 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jan 28, 2026Updated last month
- Kraken2 Server☆23Nov 24, 2025Updated 3 months ago
- Source code for the FAST'19 paper "Fast Erasure Coding for Data Storage: A Comprehensive Study of the Acceleration Techniques", Tianli Zh…☆18May 23, 2021Updated 4 years ago
- An experimental tool to find approximate max-cuts in a large graph☆10Apr 28, 2021Updated 4 years ago
- toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files☆22Aug 13, 2024Updated last year
- An experimental tool to estimate the similarity between all pairs of contigs☆40Apr 12, 2021Updated 4 years ago
- ☆12Updated this week
- A healthy human gut genome collection☆25Aug 21, 2025Updated 7 months ago
- Expose build variables obtained with built as a PyDict☆35Jan 22, 2025Updated last year
- Test of parallel compression acceleration☆15Sep 8, 2024Updated last year
- pyproject.toml parser in Rust☆34Mar 13, 2026Updated last week
- POC Nextflow pipeline to run Illumina DRAGEN software☆14Aug 15, 2025Updated 7 months ago
- Cython bindings for fpzip, a floating point image compression algorithm.☆36Mar 19, 2025Updated last year
- Python bindings to bwa mem☆32Mar 26, 2020Updated 5 years ago
- Enforce Rust documentation correctness☆14Dec 1, 2022Updated 3 years ago
- Hydra adds resilience and high availability to remote memory solutions.☆33Feb 22, 2022Updated 4 years ago
- An open-source framework for optimizing binary image processing algorithms.☆16Feb 25, 2021Updated 5 years ago
- Fork of ag with added support for PCRE2 and ~/.agrc☆13Jan 30, 2022Updated 4 years ago
- Cocytus is an efficient and available in-memory K/V-store through hybrid erasure coding and replication☆31Mar 7, 2016Updated 10 years ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆37Updated this week