This repository provides users with a framework to store, search and visualize biological data.
☆27Jun 16, 2025Updated 8 months ago
Alternatives and similar repositories for machado
Users that are interested in machado are comparing it to the libraries listed below
Sorting:
- CMOD Wikidata App built on Django Framework for editing Wikidata with existing GeneWIki bot code☆12Feb 3, 2017Updated 9 years ago
- The Dockerfiles for breeDBase☆12Feb 25, 2026Updated last week
- CViTjs - Chromosome Viewing Tool. A javascript tool for quick whole-genome views of data.☆11Jan 15, 2021Updated 5 years ago
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆13May 21, 2024Updated last year
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- Multiple Genome Viewer☆12Sep 16, 2025Updated 5 months ago
- A suite of Dash components for JBrowse's embeddable components☆14Jan 3, 2024Updated 2 years ago
- ☆16Nov 3, 2025Updated 4 months ago
- A Rust implementation of sliding window stats over fastas.☆15Sep 2, 2025Updated 6 months ago
- the GMOD database schema☆46Jun 24, 2024Updated last year
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 5 months ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Dec 7, 2018Updated 7 years ago
- This repository is meant to serve as a record of my code for solving informatics problems. 📝☆11Feb 24, 2026Updated last week
- ☆22Jul 28, 2022Updated 3 years ago
- a programme for visualization of short sequence alignment and path navigation in graphical pan-genome☆26Jan 23, 2024Updated 2 years ago
- AccuSyn: An Accurate Web-based Genome Synteny Browser☆17Aug 27, 2024Updated last year
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆38Feb 15, 2025Updated last year
- Bioinformatics pipeline for nanopore sequencing data☆11Jan 4, 2019Updated 7 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20May 20, 2025Updated 9 months ago
- Django website project for common sequence search tools.☆17Feb 25, 2026Updated last week
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆47Jun 7, 2023Updated 2 years ago
- Methods to determine sequence element (unitig) presence/absence☆23Nov 24, 2025Updated 3 months ago
- Pipeline to design taxon-specific primes in defined bacterial communities.☆25Jan 28, 2025Updated last year
- ☆19Apr 24, 2022Updated 3 years ago
- ☆43Apr 2, 2024Updated last year
- ☆40Sep 14, 2016Updated 9 years ago
- ☆21Aug 8, 2024Updated last year
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- ☆22Oct 6, 2023Updated 2 years ago
- Statistical methods for forest genetic resources analysts☆37Jan 16, 2026Updated last month
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆60Apr 24, 2024Updated last year
- Fast alignment-free pangenome creation and exploration☆28Apr 16, 2020Updated 5 years ago
- Forest Management Tool a C++ library for forest planning.☆16Feb 27, 2026Updated last week
- ☆26Oct 31, 2019Updated 6 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆34Oct 26, 2020Updated 5 years ago
- Optimized sequence graph implementations for graph genomics☆34Feb 27, 2026Updated last week
- GFA visualizer, GPU-accelerated using Vulkan☆76Aug 2, 2022Updated 3 years ago
- SURPI☆86May 10, 2016Updated 9 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆35May 4, 2023Updated 2 years ago