Coding-Potential Assessment Tool using an alignment-free logistic regression model
☆18Feb 29, 2024Updated 2 years ago
Alternatives and similar repositories for cpat
Users that are interested in cpat are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Official repo for the standalone package of Coding Potential Calculator (CPC) 2.☆32Sep 11, 2021Updated 5 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆14Aug 5, 2020Updated 6 years ago
- Coding-Non-Coding Index (CNCI)☆43Mar 6, 2018Updated 8 years ago
- An interpretable machine learning algorithm to predict disordered protein phase separation based on biophysical interactions☆14Apr 10, 2026Updated 6 months ago
- An Integrated Package for Long Non-Coding RNA Identification Utilizing Logarithm-Distance, Multi-Scale Structural Information and EIIP-Ba…☆15Sep 28, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆15Sep 14, 2021Updated 5 years ago
- Bioinformatics / Explore oligonucleotide composition similarity between assembly contigs or scaffolds to detect contaminant DNA.☆12Feb 27, 2019Updated 7 years ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆292Jul 7, 2026Updated 3 months ago
- Transcript assembly and quantification for RNA-Seq☆12Jun 3, 2019Updated 7 years ago
- Nanopore raw signal segmentation and RNA modification estimation.☆13Mar 3, 2026Updated 7 months ago
- Code accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"☆13Sep 29, 2021Updated 5 years ago
- ☆12Oct 5, 2026Updated last week
- A comprehensive pipeline for Ribo-seq data analysis☆11Jun 27, 2025Updated last year
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Apr 29, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- This is a series of scripts on the rapid construction of target interval consensus sequences from bam files and the rapid construction of…☆17Jan 12, 2024Updated 2 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆282Sep 26, 2023Updated 3 years ago
- Simultaneous exploration of thousands of long-read transcriptomes by read-level indexing☆46Updated this week
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆15Jul 2, 2023Updated 3 years ago
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆14May 11, 2023Updated 3 years ago
- Long RNA-seq analysis workflow☆23Oct 13, 2025Updated last year
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆28Mar 23, 2022Updated 4 years ago
- ORF prediction using python☆10Aug 24, 2021Updated 5 years ago
- ☆25Sep 22, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆18Sep 1, 2025Updated last year
- pathway based data integration and visualization☆52Mar 28, 2025Updated last year
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆20May 14, 2021Updated 5 years ago
- ☆23Jan 29, 2024Updated 2 years ago
- IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆23Jun 5, 2018Updated 8 years ago
- ☆13Mar 22, 2022Updated 4 years ago
- 🧪 Pipeline for detecting Ψ modification☆23May 8, 2024Updated 2 years ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆63Aug 28, 2025Updated last year
- Some useful bioinformatics pipelines for genomics analysis☆14May 25, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets☆21Jul 8, 2022Updated 4 years ago
- ☆15Jul 24, 2024Updated 2 years ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆57Oct 8, 2026Updated last week
- ☆12Sep 8, 2021Updated 5 years ago
- Phylogenetic tools for Eco-phylogenetics☆15Oct 10, 2024Updated 2 years ago
- A pipeline to identify gene family using mutiple tools and scripts.☆12Aug 22, 2021Updated 5 years ago
- Software to estimate oligonucleotide duplexes melting temperature. Includes state-of-the-art monovalent (e.g., Na+) and bivalent (Mg2+) i…☆12Sep 18, 2022Updated 4 years ago