cole-trapnell-lab / cufflinksLinks
☆320Updated 5 years ago
Alternatives and similar repositories for cufflinks
Users that are interested in cufflinks are comparing it to the libraries listed below
Sorting:
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆455Updated last year
- Graph-based alignment (Hierarchical Graph FM index)☆518Updated 3 months ago
- Strelka2 germline and somatic small variant caller☆389Updated 4 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆499Updated last month
- C++ API & command-line toolkit for working with BAM data☆429Updated 7 months ago
- Differential analysis of RNA-Seq☆312Updated 7 months ago
- Count bases in BAM/CRAM files☆322Updated 3 years ago
- Transcript assembly and quantification for RNA-Seq☆475Updated this week
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆447Updated last year
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆439Updated 4 months ago
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆212Updated 5 years ago
- Tools to process and analyze deep sequencing data.☆750Updated 5 months ago
- Java utilities for Bioinformatics☆513Updated 3 weeks ago
- STAR-Fusion codebase☆246Updated 2 months ago
- BEDOPS: high-performance genomic feature operations☆356Updated 8 months ago
- A flexible framework for rapid genome analysis and interpretation☆317Updated 3 years ago
- This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.☆245Updated 3 years ago
- Documentation for the ANNOVAR software☆245Updated 5 months ago
- Haplotype VCF comparison tools☆454Updated 2 years ago
- Quick mining and visualization of NGS data by integrating genomic databases☆268Updated 2 years ago
- parallel fastq-dump wrapper☆301Updated 2 years ago
- Read trimming tool for Illumina NGS data.☆148Updated 10 years ago
- Near-optimal RNA-Seq quantification☆712Updated last month
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆406Updated 4 months ago
- Fast and accurate gene fusion detection from RNA-Seq data☆257Updated 3 months ago
- Plot structural variant signals from many BAMs and CRAMs☆557Updated last year
- TransDecoder source☆301Updated 3 months ago
- RNA-seq workflow using STAR and DESeq2☆351Updated last week
- This Snakemake pipeline implements the GATK best-practices workflow☆262Updated 2 years ago
- lumpy: a general probabilistic framework for structural variant discovery☆335Updated 3 years ago