cole-trapnell-lab / cufflinksLinks
☆315Updated 5 years ago
Alternatives and similar repositories for cufflinks
Users that are interested in cufflinks are comparing it to the libraries listed below
Sorting:
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆442Updated last year
- Graph-based alignment (Hierarchical Graph FM index)☆502Updated 6 months ago
- Transcript assembly and quantification for RNA-Seq☆441Updated 3 weeks ago
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆210Updated 5 years ago
- Quick mining and visualization of NGS data by integrating genomic databases☆265Updated 2 years ago
- Tools to process and analyze deep sequencing data.☆720Updated last month
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆470Updated last month
- Differential analysis of RNA-Seq☆304Updated last week
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆416Updated 5 months ago
- Plot structural variant signals from many BAMs and CRAMs☆543Updated 10 months ago
- Near-optimal RNA-Seq quantification☆686Updated last month
- Count bases in BAM/CRAM files☆317Updated 3 years ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆422Updated last month
- python module to plot beautiful and highly customizable genome browser tracks☆813Updated 10 months ago
- parallel fastq-dump wrapper☆295Updated 2 years ago
- RNA-seq workflow using STAR and DESeq2☆341Updated 10 months ago
- Strelka2 germline and somatic small variant caller☆369Updated 3 years ago
- MACS -- Model-based Analysis of ChIP-Seq☆743Updated last month
- ☆261Updated 6 months ago
- Java utilities for Bioinformatics☆500Updated last week
- Fast and accurate gene fusion detection from RNA-Seq data☆241Updated 2 months ago
- TransDecoder source☆291Updated 8 months ago
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆505Updated 2 months ago
- Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.☆286Updated 2 years ago
- C++ API & command-line toolkit for working with BAM data☆424Updated 2 weeks ago
- Bioinformatics one liners from Ming Tang☆484Updated 4 years ago
- This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.☆241Updated 2 years ago
- ☆277Updated 3 months ago
- This Snakemake pipeline implements the GATK best-practices workflow☆254Updated last year
- A collection of scripts and notes related to genomics and bioinformatics☆211Updated last month