cole-trapnell-lab / cufflinksLinks
☆317Updated 5 years ago
Alternatives and similar repositories for cufflinks
Users that are interested in cufflinks are comparing it to the libraries listed below
Sorting:
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆447Updated last year
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆478Updated last week
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆211Updated 5 years ago
- Graph-based alignment (Hierarchical Graph FM index)☆508Updated 8 months ago
- Transcript assembly and quantification for RNA-Seq☆455Updated 2 weeks ago
- Tools to process and analyze deep sequencing data.☆726Updated 2 weeks ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆429Updated this week
- Count bases in BAM/CRAM files☆319Updated 3 years ago
- Java utilities for Bioinformatics☆505Updated last week
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆392Updated this week
- Strelka2 germline and somatic small variant caller☆375Updated 3 years ago
- C++ API & command-line toolkit for working with BAM data☆427Updated 2 months ago
- A flexible framework for rapid genome analysis and interpretation☆318Updated 2 years ago
- STAR-Fusion codebase☆243Updated last month
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆426Updated 7 months ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆271Updated last year
- Differential analysis of RNA-Seq☆305Updated 2 months ago
- Quick mining and visualization of NGS data by integrating genomic databases☆266Updated 2 years ago
- This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.☆243Updated 2 years ago
- TransDecoder source☆296Updated 10 months ago
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆519Updated 4 months ago
- parallel fastq-dump wrapper☆299Updated 2 years ago
- lumpy: a general probabilistic framework for structural variant discovery☆333Updated 3 years ago
- Near-optimal RNA-Seq quantification☆693Updated 3 months ago
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆838Updated 2 months ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆320Updated 2 months ago
- Tools for handling Unique Molecular Identifiers in NGS data sets☆515Updated 3 weeks ago
- This Snakemake pipeline implements the GATK best-practices workflow☆255Updated 2 years ago
- Plot structural variant signals from many BAMs and CRAMs☆544Updated last year
- Read trimming tool for Illumina NGS data.☆140Updated 10 years ago