conradry / pytorch-rgn

Related projects ⓘ

Alternatives and complementary repositories for pytorch-rgn

• sokrypton / GREMLIN_CPP
  GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!
  ☆53Updated 2 years ago
• hiranumn / DeepAccNet
  Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.
  ☆79Updated 3 years ago
• drorlab / DIPS
  Database of Interacting Protein Structures (DIPS)
  ☆95Updated 9 months ago
• Shen-Lab / gcWGAN
  Guided Conditional Wasserstein GAN for De Novo Protein Design
  ☆37Updated 3 years ago
• ElwynWang / DeepFragLib
  ☆29Updated 4 years ago
• IBM / fold2seq
  Code for Fold2Seq paper from ICML 2021
  ☆49Updated 2 years ago
• sarisabban / RamaNet
  Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure
  ☆49Updated 2 years ago
• baldassarreFe / graphqa
  Protein quality assessment using Graph Convolutional Networks
  ☆28Updated 2 years ago
• BenevolentAI / DeeplyTough
  DeeplyTough: Learning Structural Comparison of Protein Binding Sites
  ☆156Updated last year
• psipred / protein-vae
  Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies
  ☆80Updated last year
• ProteinDesignLab / protein_seq_des
  Code for our paper "Protein sequence design with a learned potential"
  ☆77Updated last year
• Graylab / deepH3-distances-orientations
  ☆34Updated 3 years ago
• sirimullalab / DLSCORE
  DLSCORE: A deep learning based scoring function for predicting protein-ligand binding affinity
  ☆49Updated last year
• piercelab / antibody_benchmark
  Antibody-Antigen Docking and Affinity Benchmark
  ☆66Updated 4 years ago
• psipred / DMPfold
  De novo protein structure prediction using iteratively predicted structural constraints
  ☆55Updated 2 years ago
• j3xugit / RaptorX-Contact
  Deep residual neural network for protein contact/distance prediction developed by Xu group
  ☆77Updated 4 years ago
• clinfo / DEFMap
  DEFMap: Dynamics Extraction From cryo-em Map
  ☆26Updated last year
• tommyhuangthu / FASPR
  an ultra-fast and accurate program for deterministic protein sidechain packing
  ☆28Updated this week
• FTD007 / PInet
  ☆25Updated 2 years ago
• PointSite / PointSite
  PointSite: a point cloud segmentation tool for identification of protein ligand binding atoms
  ☆52Updated last year
• pulimeng / DeepDrug3D
  A convolutional neural network for classifying binding pockets based on spatial and chemical information extracted from the pockets.
  ☆101Updated 3 years ago
• MartinThoma / propy3
  A Python 3 version of the protein descriptor package propy
  ☆39Updated last year
• psipred / DeepCov
  Fully convolutional neural networks for protein residue-residue contact prediction
  ☆44Updated 5 years ago
• nekitmm / DLPacker
  DLPacker
  ☆28Updated 2 months ago
• alexarnimueller / LSTM_peptides
  Long short-term memory recurrent neural networks for learning peptide and protein sequences to later design new, similar examples.
  ☆71Updated last year
• vamships / PECAN
  Help file for running the scripts to learn and evaluate graph convolution networks for epitope and paratope prediction
  ☆31Updated 4 years ago
• oxpig / Paragraph
  Antibody paratope prediction using Graph Neural Networks with minimal feature vectors
  ☆33Updated last year
• ba-lab / pdnet
  PDNET: A fully open-source framework for deep learning protein real-valued distances
  ☆34Updated 3 years ago
• ericmjl / protein-interaction-network
  Computes a molecular graph for protein structures.
  ☆58Updated last week
• RosettaCommons / trRosetta2
  Repository for publicly available deep learning models developed in Rosetta community
  ☆107Updated 3 years ago