This repository has been integrated in https://github.com/DeepRank/deeprank2
☆147Nov 28, 2023Updated 2 years ago
Alternatives and similar repositories for deeprank
Users that are interested in deeprank are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast and versatile biomolecular structure PDB file parser using SQL queries☆24Mar 17, 2023Updated 3 years ago
- Graph Network for protein-protein interface☆122Mar 22, 2024Updated 2 years ago
- iScore: an MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machi…☆31Jun 25, 2022Updated 3 years ago
- Code for "Protein Docking Model Evaluation by Graph Neural Networks"☆59May 12, 2023Updated 2 years ago
- An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.☆60Mar 12, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.☆174Sep 8, 2024Updated last year
- ATOM3D: tasks on molecules in three dimensions☆318Mar 2, 2023Updated 3 years ago
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆746Jun 19, 2024Updated last year
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆385Feb 26, 2026Updated 2 months ago
- A Python API for the RCSB Protein Data Bank (PDB)☆335Apr 21, 2026Updated last week
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆56May 2, 2022Updated 4 years ago
- A dependency-free cross-platform swiss army knife for PDB files.☆450Feb 3, 2026Updated 2 months ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆60May 6, 2024Updated last year
- mirror of https://zhanglab.ccmb.med.umich.edu/EDTSurf/☆10Jun 20, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Code for ColabDock paper☆155May 1, 2025Updated last year
- Efficient evolution from protein language models☆224Aug 26, 2023Updated 2 years ago
- Interaction Fingerprints for protein-ligand complexes and more☆495Updated this week
- Structural space exploration of AlphaFold DB☆12Oct 8, 2021Updated 4 years ago
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆98Aug 29, 2023Updated 2 years ago
- A collection of *fold* tools☆305Aug 8, 2025Updated 8 months ago
- Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm☆391Sep 16, 2025Updated 7 months ago
- ProQDock is a Protein-Protein docking scoring program that uses high level coordinate driven features compiled and trained by a Support V…☆11Dec 11, 2021Updated 4 years ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆380Jun 3, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Learning protein representation for rigid-body docking☆22Nov 2, 2019Updated 6 years ago
- A set of tools for manipulating and doing calculations on wwPDB macromolecule structure files☆180Oct 10, 2019Updated 6 years ago
- Generates consistent PSSM and/or PDB files for protein-protein complexes☆20Jun 26, 2022Updated 3 years ago
- BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…☆241May 13, 2025Updated 11 months ago
- Predicting Protein – Ligand Interaction by using Deep Learning Models☆11Nov 13, 2018Updated 7 years ago
- ☆14Jan 11, 2022Updated 4 years ago
- Diffusion models of protein structure; trigonometry and attention are all you need!☆567Dec 12, 2023Updated 2 years ago
- Code for our paper "Protein sequence design with a learned potential"☆83Sep 8, 2023Updated 2 years ago
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆277Feb 14, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- EquiDock: geometric deep learning for fast rigid 3D protein-protein docking☆257Sep 22, 2023Updated 2 years ago
- Graph Network for protein-protein interface including language model features☆34Mar 26, 2024Updated 2 years ago
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆235Dec 29, 2023Updated 2 years ago
- Protein hallucination and inpainting with RoseTTAFold☆281Mar 30, 2023Updated 3 years ago
- Pytorch implementation of Pocket2Drug: a generative deep learning model to predict binding drugs for ligand-binding sites.☆22May 19, 2022Updated 3 years ago
- predicting peptide-protein interactions☆141Dec 23, 2023Updated 2 years ago
- ☆118Dec 7, 2022Updated 3 years ago