facebookresearch / protein-ebmLinks
Energy-based models for atomic-resolution protein conformations
☆99Updated 3 years ago
Alternatives and similar repositories for protein-ebm
Users that are interested in protein-ebm are comparing it to the libraries listed below
Sorting:
- Learning protein structure with a differentiable simulator☆27Updated 6 years ago
- ☆81Updated last year
- GraphNVP: An Invertible Flow Model for Generating Molecular Graphs☆96Updated 3 years ago
- Implementation of Geometric Vector Perceptron, a simple circuit for 3d rotation equivariance for learning over large biomolecules, in Pyt…☆75Updated 4 years ago
- PyTorch library of layers acting on protein representations☆119Updated last year
- Pytorch reimplementation of Molecule Attention Transformer, which uses a transformer to tackle the graph-like structure of molecules☆58Updated 4 years ago
- Implementation of Invariant Point Attention, used for coordinate refinement in the structure module of Alphafold2, as a standalone Pytorc…☆167Updated 2 years ago
- ☆63Updated 6 years ago
- Code for Fold2Seq paper from ICML 2021☆50Updated 3 years ago
- ☆35Updated 4 months ago
- Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design☆83Updated 4 years ago
- Database of Interacting Protein Structures (DIPS)☆102Updated last year
- Code for "Biological Sequence Design with GFlowNets", 2022☆74Updated 2 years ago
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Updated 3 years ago
- Code and data for "NeVAE: A Deep Generative Model for Molecular Graphs", AAAI 2019☆56Updated 5 years ago
- Protein quality assessment using Graph Convolutional Networks☆29Updated 2 years ago
- Learning Multimodal Graph-to-Graph Translation for Molecular Optimization (ICLR 2019)☆148Updated 6 years ago
- Protein Language Model☆119Updated last year
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆120Updated 4 years ago
- Official Pytorch implementation of PLUS (Protein sequence representations Learned Using Structural information), IEEE Access 2021☆41Updated 2 years ago
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆99Updated 2 years ago
- This repository contains code for reproducing results in our paper Interpreting Potts and Transformer Protein Models Through the Lens of …☆58Updated 2 years ago
- Data and models (with prediction scripts) used in publications related to Apollo1060 platform☆65Updated last year
- Implementation of E(n)-Transformer, which incorporates attention mechanisms into Welling's E(n)-Equivariant Graph Neural Network☆227Updated last year
- Massively-Parallel Natural Extension of Reference Frame☆32Updated 2 years ago
- Code for the paper "A Deep Generative Model for Fragment-Based Molecule Generation" (AISTATS 2020)☆67Updated 2 years ago
- Predicting protein structure through sequence modeling☆112Updated 5 years ago
- ☆67Updated 3 years ago
- Molecular Generation for Desired Transcriptome Changes with Adversarial Autoencoders☆53Updated 5 years ago
- The official implementation of the Molecule Attention Transformer.☆249Updated 5 years ago