facebookresearch / protein-ebmView external linksLinks
Energy-based models for atomic-resolution protein conformations
☆103Mar 22, 2022Updated 3 years ago
Alternatives and similar repositories for protein-ebm
Users that are interested in protein-ebm are comparing it to the libraries listed below
Sorting:
- A package to predict protein inter-residue geometries from sequence data☆222Sep 27, 2021Updated 4 years ago
- Learning protein structure with a differentiable simulator☆27Jul 8, 2019Updated 6 years ago
- ☆34Oct 5, 2020Updated 5 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆60Jan 30, 2022Updated 4 years ago
- Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure☆317Nov 15, 2025Updated 3 months ago
- Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures☆49Jan 24, 2022Updated 4 years ago
- Protein design and variant prediction using autoregressive generative models☆119Jan 23, 2024Updated 2 years ago
- Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.☆89Jun 18, 2021Updated 4 years ago
- An all-atom protein structure dataset for machine learning.☆359Mar 16, 2024Updated last year
- A differentiation API for PyTorch☆30Jun 21, 2020Updated 5 years ago
- Implementation of Geometric Vector Perceptron, a simple circuit for 3d rotation equivariance for learning over large biomolecules, in Pyt…☆77Jun 8, 2021Updated 4 years ago
- ☆25May 9, 2022Updated 3 years ago
- A PyTorch framework for prediction of tertiary protein structure☆192Jun 8, 2021Updated 4 years ago
- ☆29Jul 10, 2020Updated 5 years ago
- ☆16Jun 3, 2025Updated 8 months ago
- PCA and normal mode analysis of proteins☆20May 16, 2024Updated last year
- PyTorch library of layers acting on protein representations☆119Jun 30, 2024Updated last year
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆728Jun 19, 2024Updated last year
- Protein surface topographical mapping tool☆29Aug 17, 2023Updated 2 years ago
- Spatiotemporal identification of druggable binding sites using deep learning☆22Mar 16, 2021Updated 4 years ago
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆62Aug 26, 2025Updated 5 months ago
- DISTEVAL: A web-server for evaluating protein inter-residue distances☆18Mar 7, 2022Updated 3 years ago
- OPUS-Rota4: A Gradient-Based Protein Side-Chain Modeling Framework Assisted by Deep Learning-Based Predictors☆11Apr 14, 2022Updated 3 years ago
- Comprehensive library for fast, GPU accelerated molecular gridding for deep learning workflows☆155Nov 3, 2025Updated 3 months ago
- A simple Python library to generate model peptides☆95Nov 29, 2020Updated 5 years ago
- Generative Models for Graph-Based Protein Design☆284Dec 24, 2020Updated 5 years ago
- ProteinGCN: Protein model quality assessment using Graph Convolutional Networks☆119Jul 25, 2024Updated last year
- ☆38Jan 31, 2022Updated 4 years ago
- ☆34Jul 3, 2024Updated last year
- DeeplyTough: Learning Structural Comparison of Protein Binding Sites☆167Apr 7, 2023Updated 2 years ago
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Jan 30, 2019Updated 7 years ago
- Rosetta FunFolDes – a general framework for the computational design of functional proteins.☆21Apr 12, 2019Updated 6 years ago
- Graph Network for protein-protein interface☆121Mar 22, 2024Updated last year
- A denoising diffusion probabilistic model (DDPM) tailored for conditional generation of protein distograms☆144Apr 20, 2022Updated 3 years ago
- Groundstate Reconstructive Energies using Neural Autoregressive Distribution Estimators (GreNADE)☆10Apr 1, 2022Updated 3 years ago
- ATOM3D: tasks on molecules in three dimensions☆318Mar 2, 2023Updated 2 years ago
- Database of Interacting Protein Structures (DIPS)☆104Jan 26, 2024Updated 2 years ago
- Implementation of Invariant Point Attention, used for coordinate refinement in the structure module of Alphafold2, as a standalone Pytorc…☆171Nov 25, 2022Updated 3 years ago
- DeepContact Software☆26Jun 16, 2018Updated 7 years ago