facebookresearch / protein-ebmLinks
Energy-based models for atomic-resolution protein conformations
☆97Updated 3 years ago
Alternatives and similar repositories for protein-ebm
Users that are interested in protein-ebm are comparing it to the libraries listed below
Sorting:
- Learning protein structure with a differentiable simulator☆27Updated 5 years ago
- ☆81Updated last year
- PyTorch library of layers acting on protein representations☆118Updated 11 months ago
- Implementation of Geometric Vector Perceptron, a simple circuit for 3d rotation equivariance for learning over large biomolecules, in Pyt…☆74Updated 3 years ago
- Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design☆82Updated 3 years ago
- Pytorch reimplementation of Molecule Attention Transformer, which uses a transformer to tackle the graph-like structure of molecules☆59Updated 4 years ago
- GraphNVP: An Invertible Flow Model for Generating Molecular Graphs☆93Updated 2 years ago
- Code for Fold2Seq paper from ICML 2021☆50Updated 3 years ago
- Replication attempt for the Protein Folding Model described in https://www.biorxiv.org/content/10.1101/2021.08.02.454840v1☆37Updated 3 years ago
- ☆63Updated 6 years ago
- This repository contains code for reproducing results in our paper Interpreting Potts and Transformer Protein Models Through the Lens of …☆58Updated 2 years ago
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆90Updated 2 years ago
- Implementation of Invariant Point Attention, used for coordinate refinement in the structure module of Alphafold2, as a standalone Pytorc…☆163Updated 2 years ago
- Database of Interacting Protein Structures (DIPS)☆100Updated last year
- Code for "Biological Sequence Design with GFlowNets", 2022☆73Updated 2 years ago
- Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures☆47Updated 3 years ago
- ☆34Updated last month
- Data and models (with prediction scripts) used in publications related to Apollo1060 platform☆64Updated 11 months ago
- Protein quality assessment using Graph Convolutional Networks☆29Updated 2 years ago
- Official Pytorch implementation of PLUS (Protein sequence representations Learned Using Structural information), IEEE Access 2021☆41Updated last year
- ☆67Updated 3 years ago
- Learning Multimodal Graph-to-Graph Translation for Molecular Optimization (ICLR 2019)☆150Updated 6 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆120Updated 3 years ago
- Code and data for "NeVAE: A Deep Generative Model for Molecular Graphs", AAAI 2019☆54Updated 5 years ago
- Code for the paper "A Deep Generative Model for Fragment-Based Molecule Generation" (AISTATS 2020)☆66Updated 2 years ago
- Chemical Property Prediction with Graph Convolutional Networks☆60Updated 5 years ago
- Protein Language Model☆117Updated last year
- Code for our paper "A Model to Search for Synthesizable Molecules" (https://arxiv.org/abs/1906.05221)☆78Updated last year
- pytorch implementation of trDesign☆45Updated 4 years ago
- ☆24Updated last month