j3xugit / RaptorX-ContactLinks
Deep residual neural network for protein contact/distance prediction developed by Xu group
☆79Updated 5 years ago
Alternatives and similar repositories for RaptorX-Contact
Users that are interested in RaptorX-Contact are comparing it to the libraries listed below
Sorting:
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆99Updated 3 years ago
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆57Updated 3 years ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆110Updated 2 years ago
- Repository for publicly available deep learning models developed in Rosetta community☆120Updated 4 years ago
- Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.☆90Updated 4 years ago
- A package to predict protein inter-residue geometries from sequence data☆220Updated 4 years ago
- trRosetta for protein design☆183Updated 4 years ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆92Updated 2 years ago
- open source repository☆143Updated 2 years ago
- ☆35Updated 4 years ago
- Code for our paper "Protein sequence design with a learned potential"☆81Updated 2 years ago
- ☆136Updated 5 months ago
- ☆114Updated 3 years ago
- Help file for running the scripts to learn and evaluate graph convolution networks for epitope and paratope prediction☆34Updated 5 years ago
- Fully convolutional neural networks for protein residue-residue contact prediction☆43Updated 6 years ago
- ☆135Updated 3 years ago
- Recurrent Geometric Network in Pytorch☆28Updated 5 years ago
- ☆90Updated 3 years ago
- AbLang: A language model for antibodies☆154Updated 2 years ago
- Protein-compound affinity prediction through unified RNN-CNN☆151Updated last year
- De novo protein structure prediction using iteratively predicted structural constraints☆60Updated 3 years ago
- Attempt at reproduction of AlphaFold2☆99Updated last year
- ThermoNet is a computational method for quantitative prediction of the impact of single-point mutations on protein thermodynamic stabilit…☆119Updated last year
- Calculation of interatomic interactions in molecular structures☆83Updated 3 years ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆109Updated last year
- Antibody-Antigen Docking and Affinity Benchmark☆75Updated 5 years ago
- Paratope Prediction using Deep Learning☆61Updated 2 years ago
- ☆231Updated 2 years ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆129Updated 4 years ago
- source code for https://arxiv.org/abs/2005.11248 "Accelerating Antimicrobial Discovery with Controllable Deep Generative Models and Molec…☆106Updated 2 months ago